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stemcelltracker

Tool to Segment and Track Stem Cells in 3D

stimgen

stimprog

Stimprog V.5.14b 'treadmill': Stimulus Presentation and Data Collection Software

stimulusvignetting

Code associated with "Stimulus vignetting and orientation selectivity in human visual cortex"

stn

stochastic-noise

Single cell protein expression data and analysis code for sensory fate determinant Senseless.

stomach_brain_scripts

Scripts to reproduce the analysis described by Rebollo et al on stomach brain synchronisation

striatal-action-value-neurons-reconsidered-codes

here you can find the codes for the paper by this name in elife (2018)

string_pulling_mouse_matlab

"String Pulling Behavioral Analytics" for analysis of video data of mice engaged in string-pulling

stringtie_fpkm.py

strobe-fpga

This repository contains the VHDL source (built atop the FlyPAD by Itskov et al) for the STROBE device. The VHDL project was built in Quartus II 13.0sp1.

strobe_software

This repository contains the UI source and executable, and Python post-processing scripts for the STROBE device.

strucvis

Colorful display of small RNA depth of coverage on a predicted RNA secondary structure

subcortical-auditory-atlas

Resources from our human subcortical auditory pathway mapping project

subpixelregistration.jl

Subpixel alignment of arrays.

suez

R package for mapping response-expression QTLs

sum-dg-calcium-activity-correlation-analysis

Those code are used for calculating correlations and activities of SuM-DG calcium acticity which are recorded from ocean view.

supplemental-material

Repository for supplemental material of manuscripts

survival-analysis

survival-analysis-scripts

Scripts for Survival Analysis

sweeney_clopath_2020

Model code and data analysis scripts for paper "Population coupling predicts the plasticity of stimulus responses in cortical circuits", Sweeney and Clopath

sworm-model

synaptic-competition

Computational model to simulate competition of synapses for synaptic building blocks

synem

syntheticgutcommunity

Code to reproduce the RNA-seq analysis from the paper "Mechanistic modeling identifies emergent behavior in a synthetic human gut community"

synthpop-primer

A primer on using the 'synthpop' package for the biobehavioral sciences

t5conductancemodel

The conductance models used in "The computation of directional selectivity in the Drosophila OFF motion pathway" by Gruntman, Romani, and Reiser

t5dms_data_analysis

Data and scripts for DMS of TRIM5

tabulate_counts

tcellmigration