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hvc_paper

Supplementary code and URLs to data

hvcra_preparatoryactivitydata

hybridyeasthic

Analysis of Hi-C in hybrid yeast and related ChIP-seq and RNA-seq data

hydra_behavior

Machine learning analysis of Hydra behavior

ibdmapping_ehr_figscripts

iclamp

iclip_2019

ICLIP analysis for MEG-3 and PGL-1

iclip_analysis

Bash, python, and R scripts used to analyze CLIP data.

ictrack

Image segmentation and tracking software developed by Kueh lab

ifromprof

ift-dynamics

Supplementary Code for "Dynamics of the IFT Machinery at the Ciliary Tip," Chien et al. ELife 2017

ij-fibersize

An ImageJ plugin for fiber size measurement

ij-macro_frap-mm

This macro is aimed at basic data extraction/normalisation from FRAP datasets acquired using the Metamorph software

ili

Web-based software for visualization of molecular maps in 2D and 3D

ilumi_ogs

Official Geneset (OGS) for Ignelater luminosus, at least until I figure out a long term alternative

image-preprocessing

image-processing-and-analysis

Image analysis and processing scripts

imagej-ribbon-synapse-quantification

ImageJ macro for segmentation and quantification of presynaptic ribbon and postsynaptic density

imagin2_source_code

imaging_analysis_pipeline

MATLAB functions for processing 2photon calcium imaging data

imarev

Neural dynamics of perceptual inference and its reversal during imagery

immunetopography

Analyze topography of tumor-infiltrating immune cells in histological images (QuPath/Matlab)

immunity

Code and data for "Quantification of anti-parasite and anti-disease immunity to malaria as a function of age and exposure"

indel_calling_pipeline

individualthetacluster

indrop_processing

inferelator

Inferelator_ng fork to handle single-cell RNA sequencing data

inferentialmistakes

influence-of-task-outcome-on-implicit-motor-learning

insanally2017

This is the code accompanying Insanally, et al eLife, 2019