elifesciences-publications Goto Github PK

ha_dms_2018

Deep mutational scanning of HA in modulated ER proteostasis environments

hbpcollab

hci-scripts

Miscellaneous bioinformatics scripts written by me for myself and other people

hcp-diffusion-dcm

Scripts used in Experiment 2 of my PhD, using tractography and DCM on the HCP dataset

he-et-al-2017-elife

code to reproduce Figure 3, 4 and 5 in the paper

heatmap

Heatmap function for genomic data

heffley_hull_2019_elife

Repository for the analysis code associated with the Heffley & Hull manuscropt at eLife

herbiscapes

hetio

Hetnets in Python

hetionet

Hetionet: an integrative network of disease

hgt_genes_and_sges

Source code for "Slightly beneficial genes are retained by evolving Horizontal Gene Transfer despite selfish elements"

hhmm

This repository contains the code-base for the manuscript "Statistical structure of locomotion and its modulation by odors".

hill_hio_colonization_2017

Analysis scripts for the manuscript "Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium"

hio_microinjection

This protocol describes the measurement of epithelial barrier permeability in real-time following pharmacologic treatment in human intestinal organoids using fluorescent microscopy and live cell microscopy

hivevo_reservoir

Establishment and stability of the latent HIV-1 DNA reservoir

hoffman-image-preprocessing

hoffmanlab-fa-structural-model

hoffmanlab-fluorimetry-fret

hoffmanlab-fret-analysis

hoffmanlab-image-preprocessing

hoffmanlab-public

hoffmanlab-tsmod-calibration-model

holographic-photostimulation-system

Matlab code for 3D holographic photostimulation and volumetric imaging

host_level_iav_evolution

hot-knife

hpo_ova_eggl_screen

Topology-driven analysis of protein-protein interaction networks detects functional genetic modules regulating reproductive capacity

hrp2malaria

pfhrp2 deletion malaria modelling

hta_histone_analog

Scripts used for Hocher et al. 2019, The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog

hurst-exp

Estimating Hurst exponents varying in time using neural networks for time series

hussain-2017-elife