elifesciences-publications Goto Github PK

msv_symptom_evolution

multicell

multipatch

MATLAB GUI for operating pressure system and manipulators as descriped in our multipatch method paper

multipatch_analysis

Analysis tools specific to the aiephys multipatch project.

muscledb

Database of expression of muscle tissue.

mutator-frequency

Simulation code for "Selection on mutators is not frequency-dependent"

mvpa_changepoint_fmri

mwc_parameters

MWC Model calculations

myelinatedaxonmodel

Code used in Arancibia-Carcamo, Ford, Cossell, Ishida, Tohyama & Attwell (2017) eLife

myofibrilj

A Fiji plugin for analysis of fibril morphology in fluorescence images

n5

Not HDF5

nanodisc-bengtsen-et-al

nanoscale_organization_of_rotavirus_replication_machineries

Rotavirus genome replication and assembly take place in cytoplasmic electron dense inclusions termed viroplasms (VPs). Previous conventional optical microscopy studies observing the intracellular distribution of rotavirus proteins and their organization in VPs have lacked molecular-scale spatial resolution, due to inherent spatial resolution constraints. In this work we employed super-resolution microscopy to reveal the nanometric-scale organization of VPs formed during rotavirus infection, and quantitatively describe the structural organization of seven viral proteins within and around the VPs. The observed viral components are spatially organized as 5 concentric layers. These are the source codes used in this research.

nasmythlab-ngs

nassarbrucknerfrank_elife_2019

Analysis code for: Nassar, Bruckner, Frank (2019) eLife

nat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

nat.flybrains

Support for Drosophila bridging/mirroring registrations in R

nat.nblast

R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.

nelpy

Neuroelectrophysiology object model and data analysis in Python.

netpyne

A python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

neural-analysis

neural-redundancy-elife2018

Code for "Constraints on neural redundancy", Hennig et al. (eLife, 2018)

neuroanalysis

Modular analysis tools for neurophysiology data

neuromorph

The NeuroMorph analysis and visualization toolkit

neuropythy

A neuroscience library for Python, intended to complement the existing nibabel library.

neuroquery

neuroquery_data

neurosynth-data

neurphys

python package for ephys and calcium imaging IO and analysis

neutu

Software package for neuron reconstruction and visualization