eLife Sciences's Projects
Prognostication of chronic disorders of consciousness using resting state fMRI and clinical characteristics
Peak calling script for DamID data
Calls peaks and genes from CATaDa data from Drosophila
Repository for Smith et al. 2019
Python based touch interface for reporting percepts evoked via electrical stimulation of the nervous system
To track cell and measure PercevalHR fluorescence intensity
Scripts for periderm_ATACSeq paper
Simulation model for growing phages on bacterial lawn
Code to determine phase onset times for the drosophila behavioral sequence: pupal ecdysis.
Photoinhibition Charaterization Paper, Li et al 2019
software for segmentation and tracking yeast
Packaged and versioned Analysis functions for Shahar's cells
shahar's versioned raw data and db dump
a 20 odor mice behavioral setup with dspic30f and many peripherals
Code for the analysis of song similarity for the Pidoux et al, 2018 paper in Elife
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Files relating to the paper by Reid et al. entitled Single cell RNA-seq reveals hidden transcriptional variation in malaria parasites
Single molecule DNA supercoil analysis code (Ganji and Kim et al., 2016 Nano Letters, 16, 4699; Kim and Ganji et al, 2019 eLife, submitted)
A simply physical model for plectoneme occurrence prediction (Ganji and Kim et al., 2016 Nano Letters, 16, 4699; Kim and Ganji et al, 2019 eLife, submitted)
Calculates the read coverage at a set of BED features with a user defined bp window either side. The resulting data can be plotted as a histogram or box plot.
VMD script to Calculate Potential Mean Force
The scripts of control energy analysis on pnc dataset (1st revision)
All code for the beta-barrel reader, PolarBearal from the Slusky Lab