elifesciences-publications Goto Github PK

pdoc

Prognostication of chronic disorders of consciousness using resting state fMRI and clinical characteristics

peak_calling_damid

Peak calling script for DamID data

peak_calling_for_catada

Calls peaks and genes from CATaDa data from Drosophila

peixoto

peptidergicnetworks

Repository for Smith et al. 2019

perceptmapper

Python based touch interface for reporting percepts evoked via electrical stimulation of the nervous system

percevalhr-fluorescence-intensity

To track cell and measure PercevalHR fluorescence intensity

periderm_atacseq

Scripts for periderm_ATACSeq paper

personal-identification-pipeline

pfm_simulations

phagegrowth

Simulation model for growing phages on bacterial lawn

phasefinder

Code to determine phase onset times for the drosophila behavioral sequence: pupal ecdysis.

phenazines

photoinhibitioncharaterization

Photoinhibition Charaterization Paper, Li et al 2019

phylocell

software for segmentation and tracking yeast

physplit.analysis

Packaged and versioned Analysis functions for Shahar's cells

physplitdata

shahar's versioned raw data and db dump

pic20odor

a 20 odor mice behavioral setup with dspic30f and many peripherals

pidoux_et_al_2018

Code for the analysis of song similarity for the Pidoux et al, 2018 paper in Elife

plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images

plasmodium-single-cell-rna-seq

Files relating to the paper by Reid et al. entitled Single cell RNA-seq reveals hidden transcriptional variation in malaria parasites

plectoneme_analysis

Single molecule DNA supercoil analysis code (Ganji and Kim et al., 2016 Nano Letters, 16, 4699; Kim and Ganji et al, 2019 eLife, submitted)

plectoneme_prediction

A simply physical model for plectoneme occurrence prediction (Ganji and Kim et al., 2016 Nano Letters, 16, 4699; Kim and Ganji et al, 2019 eLife, submitted)

plotscaledbedfeatures

Calculates the read coverage at a set of BED features with a user defined bp window either side. The resulting data can be plotted as a histogram or box plot.

plpegfp_image_analysis

pmf

VMD script to Calculate Potential Mean Force

pnccontrolenergy

The scripts of control energy analysis on pnc dataset (1st revision)

pocratsky_et_al_2020

poistransch

polarbearal

All code for the beta-barrel reader, PolarBearal from the Slusky Lab