elifesciences-publications Goto Github PK

sparse-coding-elife2018

code for "Large-scale two-photon imaging revealed super-sparse population codes in V1 superficial layer of awake monkeys"

spatial_netmat

Scripts linked to paper: The relationship between spatial configuration and functional connectivity of brain regions

spatial_patterns

The code for the simulations in Simon N Weber & Henning Sprekeler: 'Learning place cells, grid cells and invariances with excitatory and inhibitory plasticity'. eLife 2018.

spectra-analysis

Software to automate data analyis from spectra acquired in LightField. Code to open *.spe files based on Carl Hall's readSPE.m (https://uk.mathworks.com/matlabcentral/fileexchange/35940-readspe).

spectral-analysis

Wavelet and HHT-based routines for time series analysis

speech_in_dorsal_motor_cortex_elife_2019

Generates the analyses and figures of Stavisky et al. 2019 "Neural ensemble dynamics in dorsal motor cortex during speech in people with paralysis", eLife

sphaeroforma_transcriptome

R code for analysis of (already processed) transcriptome data for Dudin, Ondracka et al, biorXiv, 2019. The code reproduces all the analyses and plots in the figures. The raw files be available soon as supplementary material (or can be available upon request).

spike-sorting

electrophysiology analysis scripts

spikedetection

Interactively detect spikes in D mel data

spikelearning

spikesort

Fast, powerful spike sorting of extracellular neuron recordings. 99.5% accuracy.

spikesortingpca_dbscan

Spike sorting implemented with principal component analysis (PCA) and density-based spatial clustering of applications with noise (DBSCAN) for extracellular differential electrode recordings.

spimaging

Matlab functions used for the image processing of SPIM imagery in the analysis of serosa spreading in Megaselia abdita

spinal-cord-injury-elife-2018

spineimagingalm

Repo for the paper: Functional clustering of dendritic activity during decision-making

spk2fr

Reads spike timing, calculates samples of firing rate given certain condition.

splicingrates

split_merge_pl

spokpaper

Scripts and snakemake pipelines associated with the paper of Vogan & Ament-Velasquez et al. "Combinations of Spok genes create multiple meiotic drivers in Podospora"

spot-on

spot-on-cli

spot-on-matlab

spt_locandtrack

stable-and-dynamic-value

The main analysis scripts for the paper 'Stable and dynamic representations of value in the prefrontal cortex' - https://doi.org/10.7554/eLife.54313

stable-task-information

Source code files for Rule, Loback et al. 2019

stadlerlab-hi-c

stag1

inverse fluorescence after photobleaching curve fitting analysis

stathopoulos_lab

stdpopsim

A library of standard population genetic models

stemcells