eLife Sciences's Projects
Analysis code for Filipowicz, Glaze et al. (2019) "Pupil diameter encodes the idiosyncratic, cognitive complexity of belief updating"
Angular velocity integration in a fly heading circuit
Data and codes associated with the paper of the same name
Data and code to replicate the analyses from Modlmeier et al. This fits an SDE model to ant movement, resulting in estimates of motility and potential surfaces
Code for supporting AO-LLSM analysis
eLife paper code
Code supporting the paper for "Neural Arbitration between Social and Individual Learning Systems"
(Arbo)virus (We)ather (D)riven (D)ynamics R-package development repo
This code allows an arduino to take digital inputs from pins (i.e. TTL pulses from med associates) and drive multiple LEDs based on * 1. the duration of the input (length of TTL pulse) * 2. your desired Hz (milliseconds on and milliseconds off)
fMRI Correlation analysis reported in Arcaro & Livinsgtone 2017 A hierarchical, retinotopic proto-organization of the primate visual system at birth
Data and code supporting: Bang, Ershadmanesh, Nili & Fleming, Private-public mappings in human prefrontal cortex, bioRxiv (2020).
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
ASPEN repository, associated with 2019 publication
ATAC-seq pipeline data analysis from Ciona cardiopharyngeal cells
single cell ATACseq pipeline
Code and data for AurA simulations
Analyze INCENP-mCherry/mNeonGreen-Nuf2 spinning disk images to get Aurora B concentration at kinetochore, and examine its relationship with K-K distance.
automated control of behavioural apparatus and imaging for mice in home cage environment
This software is used to determine the average value around the center of a puncta.
Scripts for studying the evolution of immune genes across birds.
Scripts used in Vysokov et al. 2018 paper to be published in eLife
This repository contains the Matlab code used to generate figures and results in my bioRxiv paper "Population adaptation in efficient balanced networks" with Sophie Deneve