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analysis_filipowicz_glaze_etal_audio_2afc

Analysis code for Filipowicz, Glaze et al. (2019) "Pupil diameter encodes the idiosyncratic, cognitive complexity of belief updating"

ang_veloc_integr

Angular velocity integration in a fly heading circuit

anisotropy

ant-colonies-maintain-social-homeostasis-in-the-face-of-decreased-density

Data and codes associated with the paper of the same name

antinucci_dumitrescu_et_al_2020

ants-sde-motility-potential

Data and code to replicate the analyses from Modlmeier et al. This fits an SDE model to ant movement, resulting in estimates of motility and potential surfaces

ao-llsm

Code for supporting AO-LLSM analysis

apicaltuftpaper

aplysiaattractoranalysis

eLife paper code

aqula_ogs

arbitration

Code supporting the paper for "Neural Arbitration between Social and Individual Learning Systems"

arbowed2

(Arbo)virus (We)ather (D)riven (D)ynamics R-package development repo

archdata

arduinoledcontrol

This code allows an arduino to take digital inputs from pins (i.e. TTL pulses from med associates) and drive multiple LEDs based on * 1. the duration of the input (length of TTL pulse) * 2. your desired Hz (milliseconds on and milliseconds off)

areaprofilecorrelation

fMRI Correlation analysis reported in Arcaro & Livinsgtone 2017 A hierarchical, retinotopic proto-organization of the primate visual system at birth

article-private-public

Data and code supporting: Bang, Ershadmanesh, Nili & Fleming, Private-public mappings in human prefrontal cortex, bioRxiv (2020).

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

aspen

ASPEN repository, associated with 2019 publication

asymmetricdiffusionmapping

atac-seq

ATAC-seq pipeline data analysis from Ciona cardiopharyngeal cells

atac_mito_sc

single cell ATACseq pipeline

aura-materials

Code and data for AurA simulations

auroraconcentrationanalysis

Analyze INCENP-mCherry/mNeonGreen-Nuf2 spinning disk images to get Aurora B concentration at kinetochore, and examine its relationship with K-K distance.

autoheadfix

automated control of behavioural apparatus and imaging for mice in home cage environment

autoregulation

average-puncta-center

This software is used to determine the average value around the center of a puncta.

avian-immunity

Scripts for studying the evolution of immune genes across birds.

axon-guidance-scripts

Scripts used in Vysokov et al. 2018 paper to be published in eLife

axonradiusmapping

balancednetworkadaptation

This repository contains the Matlab code used to generate figures and results in my bioRxiv paper "Population adaptation in efficient balanced networks" with Sophie Deneve