elifesciences-publications Goto Github PK

baphy-branch-abcng

baranowski_2018

barcode_orf_assembly

Association of ORF mutations with barcodes from paired-end sequencing data

barrelemerge

Emergence of whisker barrels with modified Karbowski-Ermentrout-like axon branching population model

bcd_evolution

bcgtrials

befunderglobalchange

Data and code for the meta-analysis of biodiversity mediated effects of stressors and nutrients on decomposition

behavioral-development

Code for Badura et al

behaviorparser

betaevents

script for detecting beta events in the prestimulus TFR

bezares_et_al_2018

Scripts used in Bezares-Calderón et al. 2018 Neural circuitry of a polycystin-mediated hydrodynamic startle response for predator avoidance

bhatia_et_al_2019

bigwendb

A large orthology database to find bilaterian-specific genes

bingwu_darmanisgroup_tracheadevtmem16a

biofilm-morphogenesis

This project focus on studying how physical forces drives the morphogenesis of V. Cholerae biofilms. We wrote customized codes to analyze the transmission images.

biorxiv_countries

Code repository for "International authorship and collaboration in bioRxiv preprints"

biosynthetic_network_robustness

This repository contains the code used in Bernstein DB, Dewhirst FE, Segre D. (2019) Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome. eLife. DOI: 10.7554/eLife.39733.

biteoscope

scripts for running biteOscope and processing data

blech_clust

blobmapper

BlobMapper is a tool which aids in building models from CryoEM or X-ray electron density maps.

blood-vessel-diameter

ImageJ / FIJI measurement of blood vessel line profiles

bolger-munro_image_analysis_scripts

bond_length_analysis

booth_etal_2019

Code for "Self-sperm sperm induce resistance to the detrimental effects of sexual encounters with males in hermaphroditic nematodes".

boutonanalyzer

BoutonAnalyzer is software for detection and tracking of structural changes in en passant boutons in time-lapse light-microscopy stacks of images, developed by the Neurogeometry lab.

bpps-sipris-code

breastcancer_singlecell

brian2_paper_examples

brproject-attentionsampling

analysis code and support files for attention sampling project

brugia_metabolic_network

Files pertaining to our paper on the genome-scale metabolic network reconstruction for Brugia malayi.