eLife Sciences's Projects
Association of ORF mutations with barcodes from paired-end sequencing data
Emergence of whisker barrels with modified Karbowski-Ermentrout-like axon branching population model
Data and code for the meta-analysis of biodiversity mediated effects of stressors and nutrients on decomposition
Code for Badura et al
script for detecting beta events in the prestimulus TFR
Scripts used in Bezares-Calderón et al. 2018 Neural circuitry of a polycystin-mediated hydrodynamic startle response for predator avoidance
A large orthology database to find bilaterian-specific genes
This project focus on studying how physical forces drives the morphogenesis of V. Cholerae biofilms. We wrote customized codes to analyze the transmission images.
Code repository for "International authorship and collaboration in bioRxiv preprints"
This repository contains the code used in Bernstein DB, Dewhirst FE, Segre D. (2019) Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome. eLife. DOI: 10.7554/eLife.39733.
scripts for running biteOscope and processing data
BlobMapper is a tool which aids in building models from CryoEM or X-ray electron density maps.
ImageJ / FIJI measurement of blood vessel line profiles
Code for "Self-sperm sperm induce resistance to the detrimental effects of sexual encounters with males in hermaphroditic nematodes".
BoutonAnalyzer is software for detection and tracking of structural changes in en passant boutons in time-lapse light-microscopy stacks of images, developed by the Neurogeometry lab.
analysis code and support files for attention sampling project
Files pertaining to our paper on the genome-scale metabolic network reconstruction for Brugia malayi.