elifesciences-publications Goto Github PK

sawyer-iaps

sc

C++ code for Monte Carlo simulations of patchy spherocylinders

sc_binary_splicing

Dataset analysis, simulations and figures from single cell splicing paper

scepididymis

schnitzcells_2018

Code used in Elowitz lab in 2018

scibot

curation workflow automation and coordination

scihub

Source code and data analyses for the Sci-Hub Coverage Study

scihub-browser-data

Data for the Sci-Hub Stats Browser

scihub-manuscript

Manuscript for the Sci-Hub Coverage Study

sclabor

scRNA-seq analysis of placental tissues at labor

scopus

User-friendly Scopus and Journal Metrics data

screenings

Chemical genetic data analysis pipeline

scrnaseq_cerebellum

scsim

Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells and cells with shared gene-expression programs.

seasonalecosystem

Code and data for the article "Nutrient levels and trade-offs control diversity in a model seasonal ecosystem"

segmentation-software

segregated-dendrite-deep-learning

Deep learning in a spiking neural network using segregated dendrites.

self-assembling-manifold

The Self-Assembling-Manifold (SAM) algorithm.

self-consistent-model

Model for elife (2018) paper

sensorimotortranscription

Train (innate training) and test a Leaky RNN on transcribing spoken digit utterances to handwritten digits

seq_speak

Code for Pang and Fairhall, "Fast and Flexible..." 2019.

seqnmf

An algorithm for unsupervised discovery of sequential structure

sequencelearningsleepcode

sequenceperformanceanalysis

code for analyzing performance on sequence completion task

serialj

Record behavioral task events to files. Run on host computer.

setd8-materials

Code and data for SETD8 simulations

severemalariaanalysis

Analysis of legacy dataset

shah-elife-2020

Code for "Nishal P. Shah, N. Brackbill, C. Rhoades, A. Tikidji-Hamburyan, G. Goetz, A. Litke, A. Sher, E. P. Simoncelli, E.J. Chichilnisky. Inference of Nonlinear Receptive Field Subunits with Spike-Triggered Clustering. ELife, 2020"

shao_elife_2019

shapeout

graphical user interface for analysis and visualization of RT-DC data sets