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ngo_et_al_elife2020

Matlab code for data analyses published in Ngo et al., eLife 2020.

ngs_mutation_rate_assay

This repository contains scripts that were used during my use of Illumina sequencing to determine mutation rates.

ngspeptideprepandpred

scripts for processing NGC data for TCR recognition of peptide sequences and prediction

nicd-concentration-in-the-nucleus-as-by-binding-site-coupled-nicd-degradation

nieuwburg2017

Matlab script for postprocessing the eb1 comet data as done in Nieuwburg et al., 2017

noaa-nf

noheadresponsemaps

Data from Arcaro, Ponce, & Livingstone (2020) eLIFE, https://doi.org/10.7554/eLife.53798

non_transgenic_cell_type_profiling

Source code for analysis and figures for the paper: Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia

nor

Novel Object Add-on for Robie et al.'s JAABA

nowinski_2020

Code for Nowinski, et. al. 2020

nuclear-fractionation

Partition nuclear and cytoplasmic compartments within a cellular ROI for measurement.

nup98_elife

octopus

Pipeline for different gene expression analysis using negative biomal Generalized Linear Model

odonnelletal_2017_imbalances

Model code for O'Donnell et al, 2017

odor-mixtures

Code to generate the results for "Antagonism in olfactory receptor neurons and its implications for the perception of mixtures"

oenocytes-agam

data and code to analyse the transcriptome of Anopheles gambiae oenocytes

ofc_spc_17

Scripts and functions for the analysis of orbitofrontal cortex single-unit data collected during sensory preconditioning

oir2stddata

MATLAB script for converting Olympus .oir image files into MATLAB readable images and metadata

olfactoryreceptordistribution

Code for paper on olfactory receptor distributions.

ombb_a3mfiles

one_sided_extrusion

Codes relevant for "Chromosome organization by one-sided and two-sided loop extrusion"

ontogenyofhunting_pub

Code associated with the article "Learning steers the ontogeny of an efficient hunting sequence in zebrafish larva."

open-visual-stimulator

An arbitrary-spectrum spatial visual stimulator for vision research

opi_syn_circuit

opioids-depress-breathing-through-two-small-brainstem-sites

This contains analysis from "Opioids depress breathing through two small brainstem sites" (Bachmutsky et al. 2020)

opposite_neuron

A decentralized network model with each module consisting of congruent and opposite neurons.

opt-insitu-toolbox

opticlobe

Code accompanying Davis, Nern et al., 2018

optopad-hardware

Hardware schematics and layouts for main and LED board of the optoPAD (Moreira et al., 2019). The files have been created using Autodesk EAGLE electronic design automation (EDA) software.

optopad-software

Bonsai workflow used for control and data acquisition of the optoPAD (Moreira et al., 2019).