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building_annotations_for_mrnas_in_s.c

bwtt_pp

Code for post processing steps for BWTT acquired data (Romano et al. 2018)

caclean

CaCLEAN restores the Ca2+ release maps (or active CRUs) in beating cardiomyocytes.

cadwell2020

Code for analyses reported in Cadwell et al., 2020

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

cal-repository

Code to reproduce figures in "A big-data approach to understanding metabolic rate and response to obesity in laboratory mice"

calculate_aps_velocities_in_meas

MATLAB script for calculating action potentials propagation velocities using spikes timestamps in specified electrodes in a MEA device (coupled with microfluidics)

candida-tropicalis-analysis

candn

Code for paper "Alternative stable states in a model of microbial community limited by multiple essential nutrients"

cara_public

carriage-duration

Code for pneumococcal carriage duration

cat.extras

plotting and fitting functions

catmaid-to-blender

Plugin for Blender to interface with CATMAID Server and Pull Data

cattoglio_et_al_absoluteabundance_2019

Raw FACS data and analysis code for Cattoglio et al. 2019

cavanaghlam2020coderepository

cbem

conductance-based encoding model

cbio.seo.100

Seunghee's project

cblast

Tools for clustering neurons using synaptic connectivity

cbm_c3_c4_metabolism

Supplementary Data Submission eLife

cdpc

Bayesian method to estimate embryonic age for mouse embryos.

cebpb_delta_uorf

data and visualization script accompanying eLife publication

cegwas2-nf

GWA mapping with C. elegans

cell_separation_analysis

This python script allows the semi-automatic analysis of cell separations in 2D images, and can further perform comparisons of mean cell separation area between two conditions or genotypes, as well as the analysis of cell separation orientation and anisotropy of multiple conditions or genotypes.

cellaggregator

cellsegmentation

Segmenting Escherichia coli cells in phase contrast images based on Otsu method to read the fluorescent intensity within the cells

cellsmd3d

celltracker

scripts to track nuclei over time and measure mean intensity fluorescence levels

celltracking

Code for generating trajectories of E coli swimming in microfluidic device

cellularperkanalysis

For automated or manual quantification of pERK/tERK values in individual cells from high-resolution images