eLife Sciences's Projects
Microscope software to control galvonometers, EOM, lasers, focus, and flow chamber valves
Custom code for microscopy data analysis described in "Single cell functional genomics reveals the importance of mitochondria in cell-to-cell phenotypic variation", Dhar et al.
This code performs the particle detection, classification (Machine Learning analysis) and structural analysis of virus imaging dataset as described in our manuscript.
Code used for analysis in Mir, Stadler et al., 2018
Measure the distances between 3D particle position and closest points of the vtk surface file
code for implementing models described in manuscript by Agrawal, Pekkurnaz, Koslover, 2018
Supplementary material for mixedIBD paper (http://dx.doi.org/10.7554/eLife.40845)
Code & short tutorial for modified multi-scale entropy analysis
Model of neuronal chloride homeostasis, including impermeant anions and KCC2 transporters
Contains OpenSim model of monkey arm, based on Chan and Moran 2008
Monte Carlo simulation for comparing genomic peak files
Morphys
Motion Sensing Superpixels
notebooks and code for Denman et al., 2016, Journal of Neuroscience and Denman et al., 2017, bioRxiv
Multiplexed Shotgun Genotyping
Multivariate Stochastic Volatility Models for EEG