elifesciences-publications Goto Github PK

flyatlas2scraper

Python package to scrape FlyAtlas2 data.

flylimboptocode

flypipe

Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts

flysound

Fly sounds

focifinder3d

foldchange

Data and code for fold change detection in the EGFR pathway

follow

Feedback-based Online Local Learning Of Weights (FOLLOW)

foregut

fpkm-calculate-from-bam-or-sam

francioni-et-al.-elife-2019

freelyexpandingtissues

Analysis scripts for research on freely expanding epithelia

froudist-walsh-et-al-elife-2018

Code to reproduce the figures in Froudist-Walsh, Browning, Young, Murphy, Mars, Fleysher and Croxson, "Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain", eLife, 2018. Note that raw imaging data will be uploaded to PRIME-DE (Milham et al., Neuron, 2018) upon publication.

fs-tool

Tool to calculate fraction of shared bound peptides between HLA proteins

fumasoni_and_murray_2019

Repository of source code used for data analysis in Fumasoni and Murray, bioRxiv, 2019 (https://www.biorxiv.org/content/10.1101/770859v1)

fundamental_waveforms_extraction

Fundamental Frequency (and higher harmonics) waveform extraction from continuous speech using Empirical Mode Decomposition (EMD).

fungalsex

Code and data for the article entitled:

fungaltdnaseq_rb-tdnaseq

fusedgenemodels

fylm

FYLM Critic: extracts data from Fission Yeast Lifespan Microdissector images.

fynbs_instem

Matlab Codes for FRET Calculation and Live Cell Quantification of the data.

g418_readthrough

All code used in analysis of G418 data is publically available here.

gain_topology

Code for biophysical modeling study

gaitpapercode

galaxy-workflows

Lehtiö lab analysis workflows

galene

A tool for compensating for motion in FLIM data

galloni.etal.2020

gap-junction-sleep-control

gdsc-smlm

GDSC Single Molecule Light Microscopy ImageJ Plugins

gecai

MCMC method for estimating geCAI codon weights from CDS and mRNA abundance data

gelquant

Simple SDS-PAGE/western blot gel quantification software.