eLife Sciences's Projects
Python package to scrape FlyAtlas2 data.
Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts
Fly sounds
Data and code for fold change detection in the EGFR pathway
Feedback-based Online Local Learning Of Weights (FOLLOW)
Analysis scripts for research on freely expanding epithelia
Code to reproduce the figures in Froudist-Walsh, Browning, Young, Murphy, Mars, Fleysher and Croxson, "Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain", eLife, 2018. Note that raw imaging data will be uploaded to PRIME-DE (Milham et al., Neuron, 2018) upon publication.
Tool to calculate fraction of shared bound peptides between HLA proteins
Repository of source code used for data analysis in Fumasoni and Murray, bioRxiv, 2019 (https://www.biorxiv.org/content/10.1101/770859v1)
Fundamental Frequency (and higher harmonics) waveform extraction from continuous speech using Empirical Mode Decomposition (EMD).
Code and data for the article entitled:
FYLM Critic: extracts data from Fission Yeast Lifespan Microdissector images.
Matlab Codes for FRET Calculation and Live Cell Quantification of the data.
All code used in analysis of G418 data is publically available here.
Code for biophysical modeling study
Lehtiö lab analysis workflows
A tool for compensating for motion in FLIM data
GDSC Single Molecule Light Microscopy ImageJ Plugins
MCMC method for estimating geCAI codon weights from CDS and mRNA abundance data
Simple SDS-PAGE/western blot gel quantification software.