elifesciences-publications Goto Github PK

twostagelearning

Code and data for paper on efficient two-stage learning in songbirds and beyond

txrevise

Construct custom transcript annotations for Salmon and kallisto

u01_allele_freq_code

Plotting of allele frequencies in evolution experiments with increasing antibiotic concentrations

ucsfsaxs

GUI for SAXS analysis, with smearing correction.

ukbiobank-intell-vs-ea

Scripts used to clean and analyse intelligence and education paper

uncoveringtemporalstructurehippocampus

Partial analyses to accompany "Uncovering temporal structure in hippocampal output patterns".

undead-walking

Supporting code for Pop et al., 2020

uoamanuscript

R code for eLife UoA manuscript

uorf_tasep_icier

TASEP simulation for uORF translation

v2b_behavior

Code used in Callahan et. al. publication "Spinal V2b neurons reveal a role for ipsilateral inhibition in speed control"

v2b_paper_igor_code

Igor Pro analysis code for Callahan et al. "Spinal V2b neurons reveal a role for ipsilateral inhibition in speed control"

v4-pfc-dynamics

MATLAB codes for dynamics of a simplified network of V4 and vlPFC neurons; a firing-rate based model

vacv-ont-manuscript

Scripts associated with Vaccinia ONT manuscript

vakirlis_carvunis_mclysaght_2019

Data and scripts used in Vakirlis, Carvunis and McLysaght 2019 Biorxiv

vampire

🧛 Deep generative models for TCR sequences 🧛

vampire-analysis-1

Data analysis using the vampire models for immune cell receptor distributions

vanveen-elife

r scripts for data analysis and graphing related to van Veen et al. in review at eLife

variant_pipeline

Work on the variant_pipeline and initial r analysis used in calling variants from NGS data

vast-sdcm

vbacmd

Control software for Virtual Burrow Assay

vdjrec

T cell receptor amino acid sequence probability estimation.

vegfc

Python3 script for a phylogenetic analysis of VEGF-C amino acid sequences using BioPython, t_coffee, PhyML and the ETE toolkit

velocity_mt

ventroposterior-hypothalamus-scrna-seq

Code to reproduce analysis and figures for scRNA-seq analysis of the ventroposterior hypothalamus in Mickelsen et. al 2020

veraszto_et_al_2017

ImageJ and python scripts for the analysis of Platynereis calcium imaging data

veraszto_et_al_2018

Scripts used in Verasztó et al. 2018 Ciliary and rhabdomeric photoreceptor-cell circuits form a spectral depth gauge in marine zooplankton

verta_jones_elife_2019

Scripts used in analysis of "Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks".

vhlab-publishedstudies

Code for data analysis and figure generation from specific VH lab projects and collaborations

vhlab_vhtools

Complete installation of the VH Lab tools for Neuroscience

vibriocholerae_hgt

Tools for the analysis of horizontal gene transfer in Vibrio cholerae