eLife Sciences's Projects
Scripts to compute polygenic scores for height using GIANT and UK Biobank GWAS
MATLAB code for implementing the Population Tracking neural data analysis method.
Position tracking system working with a firewire camera
code for second PPiSeq paper
Official Geneset (OGS) for Photinus pyralis, at least until I figure out a long term alternative
Notebooks for Behrens et al.
Source code for human PRDM9 binding map project (Altemose et al. 2017)
Stimulus scripts for Predictive Focus of Gain Modulation
Prey Capture Analysis and Modeling
Parcellation of the human primary olfactory cortex into subregions based whole-brain functional connectivity profile using resting-state functional magentic resonance imaging.
This repository contains the source files for the analysis presented in Kornienko et al. 2018.
Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
Custom software to allow manual counting of neurons labeled by the pesudorabies (PRV) virus. This software was written for the Texas Biomedical Device Center at UT Dallas. Images must be converted from their native format to the Microsoft "DeepZoom" format. This software relies on Node Webkit and OpenSeadragon.
PTSA - Python Time Series Analysis
Fiji macros associated with processing data from Chen et al., eLife 2020.
code associated to scientific work intended for publication
This is a public repository to store publication related analyses for reproducible research
Data related to publication
This repository contains C++ source code for TCR clustering and correlation analysis
This software is used to Gaussian fit a puncta across multiple frames of a .tiff stack
P-wave detection method
A python library for Ca imaging data analysis.
Framework for simulation of axonal extracellular potentials in Nucleus Laminaris of the barn owl.