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poly-a-seq

polycomb-development

polygenic_selection

Scripts to compute polygenic scores for height using GIANT and UK Biobank GWAS

populationtracking

MATLAB code for implementing the Population Tracking neural data analysis method.

positrack

Position tracking system working with a firewire camera

ppiseq

code for second PPiSeq paper

ppyr_ogs

Official Geneset (OGS) for Photinus pyralis, at least until I figure out a long term alternative

pr_bc_connectivity

Notebooks for Behrens et al.

prdm9-map

Source code for human PRDM9 binding map project (Altemose et al. 2017)

predictive-gain

Stimulus scripts for Predictive Focus of Gain Modulation

preycapmaster

Prey Capture Analysis and Modeling

primaryolfactorycortexparcellation

Parcellation of the human primary olfactory cortex into subregions based whole-brain functional connectivity profile using resting-state functional magentic resonance imaging.

primed_track

priming-skin-to-regenerate-by-inducing-lef1-expression-in-fibroblasts-

prog_kornienko_2018

This repository contains the source files for the analysis presented in Kornienko et al. 2018.

programs_closed-loop_phototaxis

project_msm

proteinmotifrbm

Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox

prv-cell-counting

Custom software to allow manual counting of neurons labeled by the pesudorabies (PRV) virus. This software was written for the Texas Biomedical Device Center at UT Dallas. Images must be converted from their native format to the Microsoft "DeepZoom" format. This software relies on Node Webkit and OpenSeadragon.

ptsa_new

PTSA - Python Time Series Analysis

pub-2020elife

Fiji macros associated with processing data from Chen et al., eLife 2020.

publications

code associated to scientific work intended for publication

publications-1

This is a public repository to store publication related analyses for reproducible research

publications_data

Data related to publication

pubtcrs

This repository contains C++ source code for TCR clustering and correlation analysis

puncta-fit

This software is used to Gaussian fit a puncta across multiple frames of a .tiff stack

pwavdetection

P-wave detection method

pydentateelife2020

pyfluo

A python library for Ca imaging data analysis.

pylaminaris

Framework for simulation of axonal extracellular potentials in Nucleus Laminaris of the barn owl.