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This project forked from caltech-bioinformatics-resource-center/stathopoulos_lab
License: BSD 2-Clause "Simplified" License
stathopoulos_lab's Introduction
The codes can be used under UNIX(Centos/Ubuntu) environment with proper installation of necessary software tools.
- ChIPSeq_pipeline: A folder with bash scripts to align ChIPSeq data and perform peak calling.
- ATACSeq_pipeline: A folder with bash scripts for ATACSeq data trimming, normalization and peak calling.
- RNASeq_pipeline: A folder with bash scripts for RNASeq data alignment, gene quantification and gene differential test.
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