=====

Software package for neuron reconstruction and visualization

git clone -b <branch> https://github.com/janelia-flyem/NeuTu.git NeuTu

Here the <branch> placeholder should be specified based on which edition you want to build:

git clone -b neutube https://github.com/janelia-flyem/NeuTu.git NeuTu

git clone -b biocytin https://github.com/janelia-flyem/NeuTu.git NeuTu

git clone -b flyem_release https://github.com/janelia-flyem/NeuTu.git NeuTu

1. Make sure you have installed Qt 4.8.1+ (Qt 4.8.4 recommended)

   Various versions of Qt can be dowloaded from https://download.qt.io/archive/qt/

2. Go to the NeuTu directory and run

sh build.sh <qmake_path> <qmake_spec_path>

by specifying the qmake command path and the corresponding spec path. You can also let the script figure out qt settings by itself:

sh build.sh <qt_dir>

where <qt_dir> is the install directory of the Qt library. This simplification applies to other editions too.

Additional flags are needed to build special editions:

Please check README in the flyem_release branch: https://github.com/janelia-flyem/NeuTu/tree/flyem_release

sh build.sh <qmake_path> <qmake_spec_path> -e biocytin

See neurolabi/Compile_Windows.txt for more details.

The binary version for dark field neuron reconstruction can be downloaded from http://www.neutracing.com

Software manual for the FlyEM edition: https://www.dropbox.com/s/cnewjf7bdm3qbdj/manual.pdf?dl=0

Contact Ting Zhao: [email protected] for any questions or comments.