Topic: tcga Goto Github
Some thing interesting about tcga
Some thing interesting about tcga
tcga,Maps TCGA individual file UUIDs to respective patient and sample barcodes
User: andreabc
tcga,Survival TXT files for the 33 TCGA datasets
User: aozh7
tcga,Benchmark survival ML models against a multimodal TCGA dataset
User: bblodfon
tcga,This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa
Organization: bcgsc
tcga,Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome
User: bernardo-de-almeida
tcga,Provide R access to the NCI Genomic Data Commons portal.
Organization: bioconductor
Home Page: http://bioconductor.github.io/GenomicDataCommons/
tcga,Integrative analysis workshop with TCGAbiolinks and ELMER
Organization: bioinformaticsfmrp
Home Page: https://bioinformaticsfmrp.github.io/Bioc2017.TCGAbiolinks.ELMER/index.html
tcga,TCGAbiolinks
Organization: bioinformaticsfmrp
Home Page: http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
tcga,TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
Organization: bioinformaticsfmrp
tcga,Example data to TCGAWorkflow
Organization: bioinformaticsfmrp
tcga,GeneFlow is a scalable and flexible software library that encompasses data acquisition methods, preprocessing techniques, data analytics, data visualization, and Machine Learning algorithms that can be applied to genomic data.
User: casillasalba
tcga,TCGA data acquisition and processing for Project Cognoma
Organization: cognoma
tcga,Putting machine learning in the hands of cancer biologists
Organization: cognoma
Home Page: http://cognoma.org/
tcga,Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
User: cpreid2
tcga,ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data
Organization: dmis-lab
Home Page: https://doi.org/10.1093/bioinformatics/btaa462
tcga,CG - cancer genomics pipeline
User: dogmaticcentral
tcga,BioBombe: Sequentially compressed gene expression features enhances biological signatures
Organization: greenelab
Home Page: https://greenelab.github.io/BioBombe/
tcga,Building classifiers using cancer transcriptomes across 33 different cancer-types
Organization: greenelab
tcga,📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
User: hclimente
Home Page: https://github.com/hclimente/spada
tcga,Genomic Data Commons API wrapper
Organization: histolab
tcga,An immune-related gene prognostic index for head and neck squamous cell carcinoma
User: huazou
tcga,PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Organization: ivis-at-bilkent
Home Page: https://www.pathwaymapper.org/
tcga,Describes how to download RNA-Seq controlled data from GTEx via sra-toolkit and from TCGA via GDC Data Transfer Tool
User: karakulaktulay
tcga,A unified downloader+preprocessor for cancer genomics datasets
User: kevinhu
Home Page: https://cancer_data.kevinhu.io
tcga,Pan-cancer mycobiome atlas
Organization: knightlab-analyses
tcga,This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
User: liupei101
tcga,BSc thesis: "Convolutional Neural Networks and their Application in Cancer Diagnosis based on RNA-Sequencing"
User: mar-kan
tcga,Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
User: marvinler
tcga,Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
User: matteocereda
Home Page: http://www.ceredalab.com
tcga,CmiRClustFinder v1.0: a tool for identification of CNV co-locolized miRNA, miRNA clusers and genes in TCGA cancer cohorts.
User: msls-bioinfo
tcga,Interactive R package to quantify, analyse and visualise alternative splicing
User: nuno-agostinho
Home Page: http://nuno-agostinho.github.io/psichomics/
tcga,A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
Organization: pasmopy
Home Page: https://www.cell.com/iscience/fulltext/S2589-0042(22)00214-0
tcga,Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
User: poisonalien
Home Page: http://bioconductor.org/packages/release/bioc/html/maftools.html
tcga,The Cancer Genome Atlas datbase | Cancer Classification | Deep Learning | CNN
User: rahul-root07
tcga,A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations
User: rezacsedu
tcga,:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
Organization: ropensci
Home Page: https://docs.ropensci.org/UCSCXenaTools
tcga,DEEPEST-Fusion is a fusion detection algorithm specially designed for screening massive cancer sequencing databases
User: salzmanlab-admin
tcga,Simulation of interactions miRNA:Competing Targets
User: selcenari
tcga,HNSCC survival analysis
User: texchi2
tcga,Supplementary Material of manuscript, and Cutoff Finding R script
User: texchi2
tcga,Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
User: tjiagom
tcga,Bioconductor package for management of multi-assay data
Organization: waldronlab
Home Page: https://waldronlab.io/MultiAssayExperiment/
tcga,
Organization: waldronlab
tcga,Toolbox package for organizing and working with TCGA data
Organization: waldronlab
Home Page: https://bioconductor.org/packages/TCGAutils
tcga,WebGen Vertically Integrated Project
Organization: web4bio
Home Page: https://web4bio.github.io/webgen/main/html/
tcga,A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
User: zjufanlab
Home Page: http://tcm.zju.edu.cn/cgps/
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