Topic: tcga-data Goto Github
Some thing interesting about tcga-data
Some thing interesting about tcga-data
tcga-data,A Python script to create scatter plots from files containing integrated GDC RNA expression data.
User: aabusheikh
tcga-data,Python script to create a heatmap based on correlations in GDC expression data of PTEN with other genes.
User: aabusheikh
tcga-data,Python script to integrate files downloaded from the GDC server and normalized.
User: aabusheikh
tcga-data,Clasterization of TCGA dataset. Data preprocessing, visualization and clasterization with different alghoritms. Done mostly with Python 3.7 and Scikit-Learn library.
User: adrian-aleks
tcga-data,The Cancer Genome Atlas (TCGA), a cancer genomics reference program, has molecularly characterized more than 20,000 primary cancer samples and paired normal samples covering 33 types of cancer. This joint effort between the NCI and the National Human Genome Research Institute began in 2006.
User: alberto-00
tcga-data,Laboratory Scientist can find a correlation between gene expressions in cancer tissue. The data can be downloaded via https://portal.gdc.cancer.gov/projects/TCGA-CHOL.
User: andreehrlich
tcga-data,Computational approach to identify Survival associated Pairwise Gene Expression states.
User: asmagen
Home Page: http://dx.doi.org/10.1016/j.celrep.2019.06.067
tcga-data, Genomic data from TCGA ready to be used (organized per tissue type and in matrix form)
User: averissimo
tcga-data,This repository has the code for the AWS blog post - Enabling the aggregation and query of The Cancer Genome Atlas using AWS Glue and Amazon Athena
Organization: aws-samples
tcga-data,This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa
Organization: bcgsc
tcga-data,TCGAbiolinks
Organization: bioinformaticsfmrp
Home Page: http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
tcga-data,TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
Organization: bioinformaticsfmrp
Home Page: http://bioinformaticsfmrp.github.io/TCGAbiolinksGUI
tcga-data,Statistical analysis of TCGA-HNSC miRNA sequences for identification of biomarkers indicating lymphovascular invasion presence across clinical stages
User: cristobalmitchell
tcga-data,a neural network-based feature selection algorithm for next-generation sequencing data
Organization: deargen
Home Page: https://wx.deargendev.me/
tcga-data,Tumor2Graph: a novel Overall-Tumor-Profile-derived virtual graph deep learning for predicting tumor typing and subtyping.
User: eurus-holmes
tcga-data,Use this program can let user quickly combine the miRNA/Gene expression and clinical data. Speed up the data preprocessing step.
User: evan199893
tcga-data,
User: fvalle1
tcga-data,Notebooks for "A topic model analysis of TCGA transcriptomic data of breast and lung cancer"
User: fvalle1
tcga-data,Bioinformatics Pipeline
User: huazou
Home Page: https://zouhua.top/
tcga-data,Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
Organization: kchen-lab
tcga-data,survival of patients using ors on TCGA data
User: krishan57gupta
tcga-data,Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Organization: mahmoodlab
Home Page: http://clam.mahmoodlab.org
tcga-data,Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
Organization: mahmoodlab
tcga-data,Build the database file for cRegulome package
User: mahshaaban
tcga-data,A database for microRNA-gene/protein expression correlation in cancer.
User: mahshaaban
Home Page: https://mahshaaban.shinyapps.io/miRCancerdb/
tcga-data,BSc thesis: "Convolutional Neural Networks and their Application in Cancer Diagnosis based on RNA-Sequencing"
User: mar-kan
tcga-data,Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
User: marvinler
tcga-data,GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
User: mschubert
tcga-data,SOPHYSM - SOlid tumors PHYlogenetic Spatial Modeller - Julia GUI for Histological Analysis and Cancer Simulation
User: niccolo99mandelli
tcga-data,
User: pex2892
tcga-data,R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
User: poisonalien
tcga-data,Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data
User: rezacsedu
tcga-data,An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
Organization: ropensci
Home Page: https://docs.ropensci.org/cRegulome
tcga-data,Genomic Data Commons Query
User: rrafiee
tcga-data,A Community Curated Immune Resource Database in R format
User: shixiangwang
tcga-data,XGEP for expression-based prediction of human essential genes and candidate lncRNAs in cancer cells
User: shuzhenkuang
tcga-data,Explore the cancer relevance of your gene list
User: sigven
Home Page: https://sigven.github.io/oncoEnrichR/
tcga-data,Examples on processing and working with TCGA mutation and RNA-Seq data
User: urmi-21
tcga-data,Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
Organization: waldronlab
Home Page: https://waldronlab.github.io/MultiAssayWorkshop
tcga-data,This project focuses on analyzing gene expression data from TCGA cancer data to derive associations among genes as well as disease phenotypes, co-expression signatures, and survival analysis.
User: wanying4
tcga-data,Identifying conserved functional modules in multiple biological networks
User: wpzgithub
tcga-data,Scripts to manage biotab files from TCGA.
User: yoannpa
tcga-data,Supplementary R scripts for the manuscript "Disrupting PGE2/EP3 signaling in cancer-associated fibroblasts limits mammary carcinoma growth but promotes metastasis"
Organization: zarnackgroup
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