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Inamul Hasan Madar's Projects

2020plus icon 2020plus

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

361division icon 361division

361 Division - Scientific Training, Education and Learning

aaron icon aaron

An R package of functions I use day-to-day in analysing various next-generation sequencing data, in particular whole genome bisulfite sequencing.

abyss icon abyss

:microscope: Assemble large genomes using short reads

adv-r icon adv-r

Advanced R programming: a book

advntr icon advntr

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

advr1 icon advr1

Advanced R 1-day course taught at the University of Cambridge

affyqc_module icon affyqc_module

Affymetrix microarrays of different technology versions are very often used in transcriptomics analysis. Quality control and normalization approaches do exist, especially as packages in Bioconductor/R. However: -Procedures are often different between teams. -They are not always easy to access as they run through command lines. -It is often not clear what the meaning of the specific settings and results are -They are not always usable for the newer technology types of arrays. To tackle this, we proposed an automated well-documented and user-friendly pipeline for Affymetrix microarray quality control and normalization.

afterqc icon afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

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