Topic: bioconductor-package Goto Github
Some thing interesting about bioconductor-package
Some thing interesting about bioconductor-package
bioconductor-package,The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.
Organization: bimsbbioinfo
bioconductor-package,Clone of the Bioconductor repository for the basilisk package.
Organization: bioconductor
Home Page: https://bioconductor.org/packages/devel/bioc/html/basilisk.html
bioconductor-package,Defines many S4 generic functions used in Bioconductor
Organization: bioconductor
Home Page: https://bioconductor.org/packages/BiocGenerics
bioconductor-package,Bioconductor facilities for parallel evaluation
Organization: bioconductor
Home Page: https://bioconductor.org/packages/BiocParallel
bioconductor-package,Issues and pull requests for BiocStyle should go here.
Organization: bioconductor
bioconductor-package,Efficient manipulation of biological strings
Organization: bioconductor
Home Page: https://bioconductor.org/packages/Biostrings
bioconductor-package,A unified framework for working transparently with on-disk and in-memory array-like datasets
Organization: bioconductor
Home Page: https://bioconductor.org/packages/DelayedArray
bioconductor-package,Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Organization: bioconductor
Home Page: https://bioconductor.org/packages/GenomeInfoDb
bioconductor-package,Conveniently import and query gene models
Organization: bioconductor
Home Page: https://bioconductor.org/packages/GenomicFeatures
bioconductor-package,Representation and manipulation of genomic intervals
Organization: bioconductor
Home Page: https://bioconductor.org/packages/GenomicRanges
bioconductor-package,HDF5 backend for DelayedArray objects
Organization: bioconductor
Home Page: https://bioconductor.org/packages/HDF5Array
bioconductor-package,Foundation of integer range manipulation in Bioconductor
Organization: bioconductor
Home Page: https://bioconductor.org/packages/IRanges
bioconductor-package,S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
Organization: bioconductor
Home Page: https://bioconductor.org/packages/MatrixGenerics
bioconductor-package,Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Organization: bioconductor
Home Page: https://bioconductor.org/packages/Rsamtools
bioconductor-package,Foundation of vector-like and list-like containers in Bioconductor
Organization: bioconductor
Home Page: https://bioconductor.org/packages/S4Vectors
bioconductor-package,SummarizedExperiment container
Organization: bioconductor
Home Page: https://bioconductor.org/packages/SummarizedExperiment
bioconductor-package,Annotation of Genetic Variants
Organization: bioconductor
Home Page: https://bioconductor.org/packages/VariantAnnotation
bioconductor-package,BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
User: catavallejos
bioconductor-package,R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Organization: computational-metabolomics
Home Page: http://bioconductor.org/packages/release/bioc/html/msPurity.html
bioconductor-package,Comprehensive design of CRISPR gRNAs for nucleases and base editors
Organization: crisprverse
bioconductor-package,On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Organization: crisprverse
bioconductor-package,Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
User: drisso
bioconductor-package,Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
User: federicomarini
Home Page: https://federicomarini.github.io/GeneTonic
bioconductor-package,A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
Organization: hemberg-lab
Home Page: http://bioconductor.org/packages/SC3
bioconductor-package,A tool for unsupervised projection of single cell RNA-seq data
Organization: hemberg-lab
Home Page: http://bioconductor.org/packages/scmap
bioconductor-package,Cell signatures, with confidence.
User: kevinrue
Home Page: http://kevinrue.github.io/hancock
bioconductor-package,Copy number calling and variant classification using targeted short read sequencing
User: lima1
Home Page: https://bioconductor.org/packages/devel/bioc/html/PureCN.html
bioconductor-package,Clone of the Bioconductor repository for the batchelor package.
User: ltla
Home Page: https://bioconductor.org/packages/devel/bioc/html/batchelor.html
bioconductor-package, Clone of the Bioconductor repository for the DropletUtils package.
Organization: marionilab
Home Page: https://bioconductor.org/packages/devel/bioc/html/DropletUtils.html
bioconductor-package,Clone of the Bioconductor repository for the scran package.
Organization: marionilab
Home Page: https://bioconductor.org/packages/devel/bioc/html/scran.html
bioconductor-package,Comparison, benchmarking & QC of epigenetic datasets
Organization: neurogenomics
Home Page: https://doi.org/doi:10.18129/B9.bioc.EpiCompare
bioconductor-package,Rapid standardisation and quality control of GWAS or QTL summary statistics
Organization: neurogenomics
Home Page: https://doi.org/doi:10.18129/B9.bioc.MungeSumstats
bioconductor-package,𧬠o r t h o g e n e π§¬β¨β¨β¨β¨β¨β¨β¨ Interspecies gene mappingβ¨β¨β¨β¨β¨ π¦ π π± π π³ π π π π π πͺ± π πͺ° π π π π¦ π π π π¦ π π π π π π π π π π π π π π π π π 𦧠π π¦ π πββοΈ
Organization: neurogenomics
Home Page: https://doi.org/doi:10.18129/B9.bioc.orthogene
bioconductor-package,Provides classes for working with sets
Organization: ropensci
Home Page: https://docs.ropensci.org/BaseSet
bioconductor-package,Write CWL in R
Organization: rworkflow
Home Page: https://rcwl.org/Rcwl/
bioconductor-package,R package to access DoRothEA's regulons
Organization: saezlab
Home Page: https://saezlab.github.io/dorothea/
bioconductor-package,Interpretation of RNAseq experiments through robust, efficient comparison to public databases
User: shbrief
Home Page: https://shbrief.github.io/GenomicSuperSignature/
bioconductor-package,A Shiny framework for workflow management and data visualization
Organization: systempiper
Home Page: https://systempipe.org/sps/
bioconductor-package,Cancer Dependency Map package
Organization: uclouvain-cbio
Home Page: https://uclouvain-cbio.github.io/depmap/
bioconductor-package,piano - An R/Bioconductor package for gene set analysis
User: varemo
Home Page: https://varemo.github.io/piano/
bioconductor-package,Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
Organization: waldronlab
Home Page: https://waldronlab.io/cBioPortalData/
bioconductor-package,Curated Metagenomic Data of the Human Microbiome
Organization: waldronlab
Home Page: https://waldronlab.io/curatedMetagenomicData
bioconductor-package,The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer
Organization: waldronlab
Home Page: https://bioconductor.org/packages/curatedOvarianData
bioconductor-package,Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Organization: waldronlab
Home Page: https://bioconductor.org/packages/curatedTCGAData
bioconductor-package,Reproducible GSEA Benchmarking
Organization: waldronlab
bioconductor-package,R implementation of the LEfSe method
Organization: waldronlab
Home Page: https://waldronlab.io/lefser/
bioconductor-package,Bioconductor package for management of multi-assay data
Organization: waldronlab
Home Page: https://waldronlab.io/MultiAssayExperiment/
bioconductor-package,Single Cell multimodal data scripts for downloading datasets
Organization: waldronlab
Home Page: https://bioconductor.org/packages/SingleCellMultiModal
bioconductor-package,Toolbox package for organizing and working with TCGA data
Organization: waldronlab
Home Page: https://bioconductor.org/packages/TCGAutils
bioconductor-package,Profile RNA-seq data using published TB gene signatures
Organization: wejlab
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