Topic: genomics Goto Github
Some thing interesting about genomics
Some thing interesting about genomics
genomics,A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Organization: aidenlab
Home Page: http://aidenlab.org
genomics,A fast and sensitive gapped read aligner
User: benlangmead
genomics,ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Organization: bigdatagenomics
genomics,:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Organization: biojava
Home Page: https://biojava.org
genomics,Official git repository for Biopython (originally converted from CVS)
Organization: biopython
Home Page: http://biopython.org/
genomics,annotate a VCF with other VCFs/BEDs/tabixed files
User: brentp
Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0973-5
genomics,Official code repository for GATK versions 4 and up
Organization: broadinstitute
Home Page: https://software.broadinstitute.org/gatk
genomics,The next version of bwa-mem
Organization: bwa-mem2
genomics,Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
User: chhylp123
genomics,Fast genome-wide functional annotation through orthology assignment
Organization: eggnogdb
Home Page: http://eggnog-mapper.embl.de
genomics,A collection of awesome things regarding all omics.
User: flowhub-team
genomics,Tools for working with genomic and high throughput sequencing data.
Organization: fulcrumgenomics
Home Page: http://fulcrumgenomics.github.io/fgbio/
genomics,Data intensive science for everyone.
Organization: galaxyproject
Home Page: https://galaxyproject.org
genomics,JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Organization: gmod
Home Page: http://jbrowse.org
genomics,DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Organization: google
genomics,Python and C++ code for reading and writing genomics data.
Organization: google
genomics,A collaboratively written review paper on deep learning, genomics, and precision medicine
Organization: greenelab
Home Page: https://greenelab.github.io/deep-review/
genomics,Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
Organization: hazyresearch
Home Page: https://arxiv.org/abs/2306.15794
genomics,Fast, flexible and extensible genome browser.
Organization: higlass
Home Page: http://higlass.io
genomics,Haplotype VCF comparison tools
Organization: illumina
genomics,🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Organization: instadeepai
Home Page: https://www.biorxiv.org/content/10.1101/2023.01.11.523679v2
genomics,A curated list of bioinformatics bench-marking papers and resources.
User: j-andrews7
genomics,Scripts to download genomes from the NCBI FTP servers
User: kblin
genomics,Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
User: lh3
genomics,Sequence-to-graph mapper and graph generator
User: lh3
Home Page: https://lh3.github.io/minigraph
genomics,A versatile pairwise aligner for genomic and spliced nucleotide sequences
User: lh3
Home Page: https://lh3.github.io/minimap2
genomics,Java utilities for Bioinformatics
User: lindenb
Home Page: https://jvarkit.readthedocs.io/
genomics,Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
User: lucidrains
genomics,Bayesian haplotype-based mutation calling
Organization: luntergroup
genomics,A comprehensive tutorial about GWAS and PRS
User: mareesat
genomics,Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
User: moshi4
Home Page: https://moshi4.github.io/pyCirclize/
genomics,Oxford Nanopore's Basecaller
Organization: nanoporetech
Home Page: https://nanoporetech.com/
genomics,Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Organization: nf-core
Home Page: https://nf-co.re/sarek
genomics,🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
Organization: pinellolab
Home Page: https://pinellolab.github.io/DNA-Diffusion/
genomics,Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
User: poisonalien
Home Page: http://bioconductor.org/packages/release/bioc/html/maftools.html
genomics,A React web application to query and share any PostgreSQL database.
User: priyank-purohit
genomics,Performant Pythonic GenomicRanges
Organization: pyranges
Home Page: https://pyranges.readthedocs.io
genomics,A high-performance, Pythonic language for bioinformatics
Organization: seq-lang
Home Page: https://seq-lang.org
genomics,Python library to handle Gene Ontology (GO) terms
User: tanghaibao
genomics,Python library to facilitate genome assembly, annotation, and comparative genomics
User: tanghaibao
genomics,Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
User: tariqdaouda
Home Page: http://pygeno.iric.ca
genomics,:scissors: :zap: Rapid haploid variant calling and core genome alignment
User: tseemann
genomics, C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Organization: vcflib
Home Page: https://github.com/vcflib/vcflib#vcflib
genomics,tools for working with genome variation graphs
Organization: vgteam
Home Page: https://biostars.org/tag/vg/
genomics,Ultra-fast and memory-efficient (meta-)genome assembler
User: voutcn
Home Page: http://www.ncbi.nlm.nih.gov/pubmed/25609793
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.