Topic: gene-sets Goto Github
Some thing interesting about gene-sets
Some thing interesting about gene-sets
gene-sets,Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Organization: broadinstitute
gene-sets,Reference implementation of the paper Redundancy-aware unsupervised ranking based on game theory - application to gene enrichment analysis
User: chiarabales
gene-sets,A web application for exploring, analyzing, and curating pathway databases
Organization: compath
Home Page: http://compath.rtfd.io/
gene-sets,A template package for integrating new pathway databases to ComPath
Organization: compath
gene-sets,DBRetina python package
Organization: dbretina
Home Page: https://dbretina.github.io/DBRetina/
gene-sets,Code and resources related to the olfactory regeneration project
User: diyadas
gene-sets,Evolutionary Transcriptomics with R
Organization: drostlab
Home Page: https://drostlab.github.io/myTAI/
gene-sets,GMT files for the mulea R package
Organization: eltebioinformatics
Home Page: https://www.biorxiv.org/content/10.1101/2024.02.28.582444v1
gene-sets,muleaData is an ExperimentHubData Bioconductor package for the mulea R package
Organization: eltebioinformatics
Home Page: https://www.biorxiv.org/content/10.1101/2024.02.28.582444v1
gene-sets,An R package containing tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene sets).
Organization: emsl-computing
gene-sets,A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
User: eonurk
Home Page: https://eonurk.github.io/cinaR/
gene-sets,Ready-to-use curated genesets for cinaR
User: eonurk
gene-sets,A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Organization: epigen
Home Page: https://epigen.github.io/enrichment_analysis/
gene-sets,BioBombe: Sequentially compressed gene expression features enhances biological signatures
Organization: greenelab
Home Page: https://greenelab.github.io/BioBombe/
gene-sets,A client for an open-source web app that allows creating, sharing, and analyzing gene sets
Organization: greenelab
gene-sets,MSigDB gene sets for multiple organisms in a tidy data format
User: igordot
Home Page: https://igordot.github.io/msigdbr
gene-sets,Lightweight Iterative Gene set Enrichment in R
User: jefworks
Home Page: https://CRAN.R-project.org/package=liger
gene-sets,:chart: The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
User: kmezhoud
gene-sets,Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
User: krassowski
gene-sets,resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
User: lab-conrad
gene-sets,Package to calculate functional similarity between genes https://biocor.llrs.dev
User: llrs
Home Page: https://www.bioconductor.org/packages/BioCor/
gene-sets,Package to analyse gene sets
User: llrs
gene-sets,COVID-19 Crowd Generated Gene and Drug Set Library
Organization: maayanlab
Home Page: https://amp.pharm.mssm.edu/covid19/
gene-sets,A repository for the Playbook Workflow Builder project.
Organization: maayanlab
Home Page: https://playbook-workflow-builder.cloud
gene-sets,enabling pathway analysis of curated chip-seq data
User: markziemann
gene-sets,A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)
User: markziemann
Home Page: http://dee2.io/genesets.html
gene-sets,Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
User: matteocereda
Home Page: http://www.ceredalab.com
gene-sets,Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
User: molecularpathologylab
Home Page: https://SubtypeExploreR.qub.ac.uk
gene-sets,Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
Organization: moseleybioinformaticslab
gene-sets,Analysis of enrichment of gene sets with a GUI and CLI
Organization: pavlidislab
Home Page: http://erminej.msl.ubc.ca/
gene-sets,R wrapper for ermineJ
Organization: pavlidislab
Home Page: https://pavlidislab.github.io/ermineR/index.html
gene-sets,Script that converts MSigDB '.gmt' files into a tab-delimited gene-set ready for use in 'Genomica'
User: rgranit
gene-sets,Experimental version of data package associated with chipenrich
Organization: sartorlab
gene-sets,:bar_chart: Identify cell types and pathways affected by genetic risk loci.
User: slowkow
Home Page: http://www.broadinstitute.org/mpg/snpsea/
gene-sets,:chart_with_downwards_trend: Non-parametric rank enrichment test for binary data.
User: slowkow
gene-sets,gene-set clustering and network visualization
Organization: unistbig
gene-sets,UVA DSI Capstone :: Gene Set Creation Algorithm for Microarray Studies with Low Sample Size
User: user01
gene-sets,Full results to accompany Zhu and Stephens (2018).
User: xiangzhu
Home Page: https://xiangzhu.github.io/rss-gsea/
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