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Name: Dr. FAN, Xiaohui
Type: User
Company: Zhejiang University
Bio: single-cell omics; spatial transcriptomics; TCM network biology
Location: Hangzhou, China
Name: Dr. FAN, Xiaohui
Type: User
Company: Zhejiang University
Bio: single-cell omics; spatial transcriptomics; TCM network biology
Location: Hangzhou, China
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
The source code and results for different methods on annotating external testing datsets of human and mouse.
Infer cell-cell communications based on feed-forward neural network
a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
SCOTCH is a Single-Cell multi-modal integration method leveraging the Optimal Transport algorithm and a cell matCHing strategy
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references
Identifying key genes and cell subclusters for time-series single cell sequencing data
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
Repo for TCMChat: A Generative Large Language Model for Traditional Chinese Medicine
A declarative, efficient, and flexible JavaScript library for building user interfaces.
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TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
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Some thing interesting about visualization, use data art
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.