Topic: rna-sequencing Goto Github
Some thing interesting about rna-sequencing
Some thing interesting about rna-sequencing
rna-sequencing,This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
User: 10adavis
rna-sequencing,:dna: Prediction of m6A RNA modifications on all SG-NEx direct RNA-Seq samples
User: bce99
Home Page: https://github.com/GoekeLab/sg-nex-data
rna-sequencing,Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
User: bissessk
rna-sequencing,Components for sequence mapping under the Bio::SeqAlignment namespace
User: chrisarg
rna-sequencing,TP Bioinformatica - UTN FRBA
User: cspinetta
rna-sequencing,DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
User: darelab2014
rna-sequencing,Various functions to inspect, extract, and visualise long-read RNA-seq data.
User: eleni-chr
rna-sequencing,
User: fatemehrshd
rna-sequencing,A portfolio of the work done during COMP 260 during S17 at Wesleyan University
User: frydaddy07
rna-sequencing,Python library to access Gene Expression Omnibus Database (GEO)
User: guma44
rna-sequencing,Inter-sample analysis of SQANTI classifications
User: jacobwindsor
rna-sequencing,Project to simulate simple Oxford Nanopore Technologies RNA signals
User: jannessp
rna-sequencing,Bio Big Data and Precision Medicine Training Course
User: jeongu
rna-sequencing,Constructing Neoantigen Vaccine Pipeline with pVACtools
User: jeongu
rna-sequencing,RNA-Seq data analysis: whole transcriptome, stranded, dUTP method
User: kicheolkim
rna-sequencing,Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
Organization: krasnitzlab
Home Page: https://krasnitzlab.github.io/RAIDS/
rna-sequencing,Git repository containing all the resources related to a school project on DNA/RNA strands construction Phylogenetic tree simulation using Functionnal Programming
User: lcsrodriguez
rna-sequencing,Python based script which enables you to translate DNA or RNA, targeted towards high school biology. U=A G=C and exc.
User: leifursteinn
rna-sequencing,Automated and friendly RNA-seq analysis (migrated to Parse Server)
User: lioscro
Home Page: http://alaska.caltech.edu
rna-sequencing,An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
Organization: lrb-iimcb
rna-sequencing,A pipeline to assess the quantification of transcripts.
User: lweasel
Home Page: http://piquant.readthedocs.org/en/latest/
rna-sequencing,As part of an overall strategy for improving therapies for childhood cancers, the PPTC seeks to develop models for the types of tumors that will be encountered in early phase clinical testing by establishing patient derived xenografts (PDXs) from high-risk childhood cancers refractory to current standard of care treatments. Genomic profiling of these models is required to enable PPTC investigators to develop robust "responder hypotheses" when drug activity is observed. With funding provided by Alex's Lemonade Stand Foundation, we genomically characterize a major subset of 286 PDX models. We use whole exome sequencing, transcriptome sequencing, and SNPArray to characterize the tumor models. The focus on DNA and RNA sequencing data mirrors the current standard practice in most clinical diagnostics lab that use these technologies to detect the spectrum of targetable mutations, gene amplifications, and gene fusion events relevant to preclinical drug development.
Organization: marislab
rna-sequencing,Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
User: matteocereda
Home Page: http://www.ceredalab.com
rna-sequencing,This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
User: mrdanieleze
rna-sequencing,RNA-Sequencing Read-Alignment
User: nadernamini
rna-sequencing,eproduciton of a publication regarding gene expression in different phases of lactation in humans
User: niqolla
rna-sequencing,Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Organization: novoalab
rna-sequencing,DisCoVering potential candidates of RNAi-based therapy for SARS-CoV-2 using computational methods
User: nrohani
rna-sequencing,A script to find adaptor and index sequence in raw small RNA sequencing data
User: pk7zuva
rna-sequencing,Annotation and Analysis of Deep Sequencing Variants from CirSeq
User: ptdolan
Home Page: ptdolan.github.io/CirQuestDSV
rna-sequencing,Image Encryption using GENOMICS (Central Dogma algorithm).
User: rupak09
rna-sequencing,Ontology of RNA Sequencing
User: safisher
rna-sequencing,R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
User: smaegol
rna-sequencing,A comprehensive pipeline for RNAseq data analysis
User: sunyumail93
rna-sequencing,QUAlity control for RNA_Seq, a nextflow pipeline
User: tluquez
rna-sequencing,A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).
User: vniems
rna-sequencing,Pipeline and scripts for the comparative analysis of ribosome profiling and matched RNA sequencing data between organs and across species.
User: zhongyiwang1
rna-sequencing,discovering novel biomarkers in RNA-Seq data with tree-based models and survival analysis
User: zihengzzh
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