Topic: single-cell-analysis Goto Github
Some thing interesting about single-cell-analysis
Some thing interesting about single-cell-analysis
single-cell-analysis,Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
User: arogozhnikov
single-cell-analysis,Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
Organization: berenslab
Home Page: https://doi.org/10.1186/s13059-021-02451-7
single-cell-analysis,An analytics package for single cell data
User: bioturing
Home Page: https://signac.bioturing.com
single-cell-analysis,An implementation of MNN (Mutual Nearest Neighbors) correct in python.
User: chriscainx
single-cell-analysis,SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Organization: ciccalab
Home Page: https://github.com/ciccalab/SIMPLI/wiki
single-cell-analysis,PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
User: dingwb
Home Page: https://dingwb.github.io/PyComplexHeatmap/
single-cell-analysis,Code for scKINETICS (ISMB 2023)
Organization: dpeerlab
single-cell-analysis,Simulating single-cell data using gene regulatory networks 📠
Organization: dynverse
Home Page: https://dyngen.dynverse.org
single-cell-analysis,A collection of 50+ trajectory inference methods within a common interface 📥📤
Organization: dynverse
Home Page: https://dynverse.org
single-cell-analysis,SCASA: Single cell transcript quantification tool
User: eudoraleer
single-cell-analysis,Spatial-Linked Alignment Tool
Organization: gao-lab
Home Page: https://slat.readthedocs.io/en/latest/
single-cell-analysis,Accurate and fast cell marker gene identification with COSG
User: genecell
Home Page: https://cosg.readthedocs.io/en/latest/
single-cell-analysis,Cluster single cells and analyze cell clade relationships with colorful visualizations.
User: gregoryschwartz
Home Page: https://gregoryschwartz.github.io/too-many-cells/
single-cell-analysis,represent each cell in UMAP plots as a pie chart
User: harbourlab
single-cell-analysis,A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
User: hubioinfo
single-cell-analysis,🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Organization: immunomind
Home Page: https://immunarch.com
single-cell-analysis,HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
Organization: jefworks-lab
Home Page: http://jef.works/HoneyBADGER/
single-cell-analysis,R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Organization: jinworks
single-cell-analysis,BEER: Batch EffEct Remover for single-cell data
User: jumphone
single-cell-analysis,Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
Organization: kchen-lab
single-cell-analysis,Marker Selection by matching manifolds and elastic net
Organization: kchen-lab
Home Page: https://scmer.readthedocs.io/
single-cell-analysis,Haplotype-aware CNV analysis from single-cell RNA-seq
Organization: kharchenkolab
Home Page: https://kharchenkolab.github.io/numbat/
single-cell-analysis,Spatial Single-Cell Analysis Toolkit
Organization: labsyspharm
Home Page: https://scimap.xyz/
single-cell-analysis,Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
Organization: nadeemlab
Home Page: https://oncopathtk.org
single-cell-analysis,A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu/SeuratV3Wizard
single-cell-analysis,An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
User: paulranum11
single-cell-analysis,Context specific and dynamic gene regulatory network reconstruction and analysis
Organization: pinellolab
single-cell-analysis,Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
User: poseidonchan
Home Page: https://sctape.readthedocs.io/
single-cell-analysis,R package to visualize gene expression data based on weighted kernel density estimation
Organization: powellgenomicslab
single-cell-analysis,Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
Organization: quadbio
single-cell-analysis,Tutorial for scRNA-seq data analysis beginners using R
Organization: quadbio
single-cell-analysis,Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
Organization: quadbio
single-cell-analysis,Analysis Pipeline for Single Cell ATAC-seq
User: r3fang
single-cell-analysis,<<------ Use SnapATAC!!
User: r3fang
single-cell-analysis,A Library for Denoising Single-Cell Data with Random Matrix Theory
Organization: rabadanlab
single-cell-analysis,scPretrain: Multi-task self-supervised learning for cell type classification
User: ruiyi-zhang
single-cell-analysis,SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
Organization: sankaranlab
single-cell-analysis,Community-provided extensions to Seurat
Organization: satijalab
single-cell-analysis,Code repository for single cell RNA-seq
User: sgi-lungcancer
single-cell-analysis,Single Cell Analysis Pipelines
Organization: singleron-rd
Home Page: https://www.singleron.bio/
single-cell-analysis,🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
User: slowkow
Home Page: https://portals.broadinstitute.org/harmony/
single-cell-analysis,R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
User: sqjin
single-cell-analysis,Scissor package
User: sunduanchen
single-cell-analysis,Dynamic models for single-cell RNA-seq time series.
Organization: theislab
single-cell-analysis,ClusterMap for multi-scale clustering analysis of spatial gene expression
Organization: wanglab-broad
single-cell-analysis,Comparison of dimensionality reduction methods
Organization: xzhoulab
single-cell-analysis,Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
Organization: yanglabhkust
single-cell-analysis,Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
User: yanwu2014
single-cell-analysis,An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
User: zhanghao-njmu
Home Page: https://zhanghao-njmu.github.io/SCP/
single-cell-analysis,ChatCell: Facilitating Single-Cell Analysis with Natural Language
Organization: zjunlp
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