Topic: atac-seq Goto Github
Some thing interesting about atac-seq
Some thing interesting about atac-seq
atac-seq,A toolkit for NGS analysis with Python
User: afrendeiro
Home Page: http://ngs-toolkit.readthedocs.io
atac-seq,Cell type specific enrichments using finemapped variants and quantitative epigenetic data
User: caleblareau
Home Page: https://caleblareau.github.io/gchromVAR/
atac-seq,Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Organization: costalab
Home Page: https://reg-gen.readthedocs.io/
atac-seq,ATAC-seq snakemake pipeline
User: crazyhottommy
atac-seq,CWL based Bioinformatics Workflows
Organization: datirium
atac-seq,Code for scKINETICS (ISMB 2023)
Organization: dpeerlab
atac-seq,Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
Organization: epigen
Home Page: https://epigen.github.io/atacseq_pipeline/
atac-seq,A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
Organization: epigen
Home Page: https://epigen.github.io/dea_limma/
atac-seq,A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Organization: epigen
Home Page: https://epigen.github.io/enrichment_analysis/
atac-seq,A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Organization: epigen
Home Page: https://epigen.github.io/genome_tracks/
atac-seq,Pipelines for NGS data preprocessing by the Bock lab and friends
Organization: epigen
atac-seq,chromatin Variability Across Regions (of the genome!)
Organization: greenleaflab
Home Page: https://greenleaflab.github.io/chromVAR/
atac-seq,nucleosome calling using ATAC-seq
Organization: greenleaflab
atac-seq,deepStats: a stastitical toolbox for deeptools and genomic signals
User: gtrichard
atac-seq,Analysis pipelines for genomic sequencing data
User: igordot
Home Page: https://igordot.github.io/sns
atac-seq,AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
User: itsvenu
Home Page: https://bioconductor.org/packages/ALPS
atac-seq,R package IReNA
User: jiang-junyao
atac-seq,Extract Sequence from Genome According to Annotation File
User: junjunlab
Home Page: https://github.com/junjunlab/BioSeqUtils
atac-seq,A small R package to make sequencing read coverage plots in R.
User: kauralasoo
atac-seq,ATAC-seq and DNase-seq processing pipeline
Organization: kundajelab
atac-seq,HMMRATAC peak caller for ATAC-seq data
Organization: liulabub
atac-seq,Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
Organization: loosolab
atac-seq,MACS -- Model-based Analysis of ChIP-Seq
Organization: macs3-project
Home Page: https://macs3-project.github.io/MACS/
atac-seq,Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
Organization: manchesterbioinference
atac-seq,Customizable workflows based on snakemake and python for the analysis of NGS data
Organization: maxplanck-ie
Home Page: http://snakepipes.readthedocs.io
atac-seq,Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
Organization: miraldilab
atac-seq,An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
Organization: ncbi-hackathons
atac-seq,ATAC-seq peak-calling and QC analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/atacseq
atac-seq,Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Organization: nf-core
Home Page: https://nf-co.re/differentialabundance
atac-seq,The ChIP-Seq peak calling algorithm using convolution neural networks
User: odb9402
atac-seq,A toolkit for working with ATAC-seq data.
Organization: parkerlab
atac-seq,A toolkit for QC and visualization of ATAC-seq results.
Organization: parkerlab
atac-seq,Benchmarking computational single cell ATAC-seq methods
Organization: pinellolab
atac-seq,Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
User: seandavi
atac-seq,Coupled clustering of single cell genomic data
Organization: suwonglab
atac-seq,PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Organization: suwonglab
atac-seq, Analysing Capture Seq Count Data
Organization: teammaclean
atac-seq,A Python package for fast operations on 1-dimensional genomic signal tracks
Organization: thejacksonlaboratory
atac-seq,Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
User: tobiasrausch
Home Page: https://tobiasrausch.com/courses/atac/
atac-seq,Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/seq2science
atac-seq,A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
User: wbaopaul
atac-seq,Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
User: wzthu
Home Page: https://www.bioconductor.org/packages/release/bioc/html/esATAC.html
atac-seq,:dart: ChIP peak Annotation, Comparison and Visualization
Organization: yulab-smu
Home Page: https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
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