Topic: minimap2 Goto Github
Some thing interesting about minimap2
Some thing interesting about minimap2
minimap2,Scalable and High Performance Variant Calling on Cluster Environments
Organization: abs-tudelft
minimap2,Python module to manipulate and visualize minimap2's cs tag
User: akikuno
Home Page: https://akikuno.github.io/cstag/cstag
minimap2,Converts a part of an alignment (.PAF perhaps others sometimes) to a Circos image using BED and fasta files.
User: antoineho
minimap2,WebAssembly modules for genomics
Organization: biowasm
Home Page: https://biowasm.com
minimap2,GateSeeder is the first near-memory CPU-FPGA co-design for alleviating both the compute-bound and memory-bound bottlenecks in short and long-read mapping. GateSeeder outperforms Minimap2 by up to 40.3×, 4.8×, and 2.3× when mapping real ONT, HiFi, and Illumina reads, respectively.
Organization: cmu-safari
minimap2,Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
Organization: cmu-safari
minimap2,The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
Organization: cmu-safari
minimap2,SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
Organization: cmu-safari
minimap2,Viral genome coverage evaluation for metagenomic diagnostics :drop_of_blood:
User: esteinig
minimap2,Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
User: fg6
minimap2,Rust bindings to minimap2 library
User: jguhlin
minimap2,Powerful long read aligner for Ruby
User: kojix2
Home Page: https://kojix2.github.io/ruby-minimap2/
minimap2,Mitochondrial Long-read Iterative Assembly
User: lirepo
minimap2,This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.
User: mansikath
minimap2,Repository for variant calling utilizing bioinformatics tools and databases
User: mansikath
minimap2,A lightweight library for working with PAF (Pairwise mApping Format) files
User: mbhall88
Home Page: https://mbh.sh/pafpy/
minimap2,Real-time species-typing visualisation for nanopore data.
User: mbhall88
minimap2,simplified cellranger for long-read data
User: mehdiborji
minimap2,Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
User: sanojpunchihewa
minimap2,preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.
Organization: simpsonlab
Home Page: http://preqc-lr.readthedocs.io/en/latest/
minimap2,Python script for comparing two genome assemblies
User: tpoorten
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