Name: Michael Hall
Type: User
Company: University of Melbourne | Doherty Institute
Bio: Postdoc @ University of Melbourne with @lachlancoin. Bioinformatics | TB | Nanopore | Microbial Genomics | Software Dev.
Location: Sunshine Coast, Australia
Blog: https://mbh.sh
.dotfiles
Repo to hold all my config files
20240408-cpg-clinic
Slides for my CPG (Centre for Pathogen Genomics) bioinformatics clinic on 08/04/2024.
assembly-dereplicator
A tool for removing redundant genomes from a set of assemblies
bam_slice
Cut slices out of a BAM file given a list of positions.
basecall-tb-sputum-project
Pipeline to basecall the TB sputum nanopore data
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
biofast
Benchmarking programming languages/implementations for common tasks in Bioinformatics
bioscripts
Collection of scripts for doing various tasks
clap
A full featured, fast Command Line Argument Parser for Rust
classification_benchmark
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
cli11
CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.
compression_benchmark
Benchmarking fastq compression with generic (mature) compression algorithms
conifer
Calculate confidence scores from Kraken2 output
container_recipes
Repository with all my container recipes 👩🍳
cramino
A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
csi-rust
Slides for Computational Sciences Initiative (CSI) Bioinformatics Seminar on Rust
cud
Color Universal Design colourblind-friendly python matplotlib palette
cyvcf2
cython + htslib == fast VCF and BCF processing
doherty-seminar-20210408
Slides for my seminar at the Doherty Institute on 08/04/2021
drprg
Drug Resistance Prediction with Reference Graphs
drprg-index
Repository of prebuilt indices for Dr. PRG
drprg-paper
Workflow and files associated with the paper for DrPRG
dunstan_nanopore_amplicon
Workflow for analysing Nanopore amplicon data for the Dunstan group
eipp-2019-singularity
Singularity group project for EIPP 2019
envs-primer
Presentation for EBI 2021 Predocs on software environments and containers
fast5seek
Subset of fast5 files contained in a fastq, BAM, or SAM file.
fastaq
Python3 scripts to manipulate FASTA and FASTQ files
fastq-dl
Download FASTQ files from SRA or ENA repositories.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
