Topic: smith-waterman Goto Github
Some thing interesting about smith-waterman
Some thing interesting about smith-waterman
smith-waterman,A Node.JS function to compare two arrays with the smith-waterman Algorithm
User: a1c0
smith-waterman,Golang metrics for calculating string similarity and other string utility functions
User: adrg
Home Page: https://pkg.go.dev/github.com/adrg/strutil
smith-waterman,Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
User: althonos
Home Page: https://pyopal.readthedocs.io
smith-waterman,An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
User: amirreza-mousavi
smith-waterman,Less-wrong single-file Numba-accelerated Python implementation of Gotoh affine gap penalty extensions for the Needleman–Wunsch, Smith-Waterman, and Levenshtein algorithms for sequence alignment
User: ashvardanian
Home Page: https://github.com/ashvardanian/stringzilla
smith-waterman,Lots of protein
User: carlosgeos
smith-waterman,Bellman Equation, Needleman-Warsh, Smith-Waterman Algorithms test and written in Ruby
User: cdeliens
smith-waterman,The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
Organization: cmu-safari
smith-waterman,SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
Organization: cmu-safari
smith-waterman,Biosequence analysis library
User: danielfamiyeh
smith-waterman,DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.
User: dulandias
smith-waterman,Global and Local Sequence Alignment
User: enescigdem
smith-waterman,A simple application to calculate similarity between two files (text document) using Smith-Waterman algorithm that is used originally to determine similar region between two sequences of DNA
User: eriekrahman
smith-waterman,C/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)
User: eriksjolund
smith-waterman,
User: filletofish
smith-waterman,Fuzzy finder algorithms a la Smith-Waterman for Zig.
User: fjebaker
smith-waterman,A C++ implementation of the Smith - Waterman algorithm. The system consists of 3 different implementations: the one is sequential, while the other two parallelize the execution in a coarse and a fine level respectively, with the use of multithreading.
User: giorgapost
smith-waterman,Improved Smith-Waterman Algorithm
User: guoye-zhang
smith-waterman,A Series of SW Parallelization for Genome Assemblies
User: hafred
smith-waterman,Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.
User: hewillk
smith-waterman,Implement parallel Smith Waterman algorithm on CUDA
User: howeng98
smith-waterman,Performance optimizations for Linear Gap Smith Waterman algorithm
User: hsmajlovic
smith-waterman,This work implements a dynamic programming algorithm for performing local sequence alignment. Through parallelism, it can run 136X times faster than a software running the same algorithm.
User: jasonlin316
smith-waterman,Dynamic Programming in Erlang.
User: joergen7
smith-waterman,Parallel and Distributd Computing Project
User: kaserashi
smith-waterman,El presente trabajo muestra la aplicación de algoritmos de alineación de secuencias conocidos como needleman-wunsch (global), smith-waterman (local) y semi-global con sus variantes (kband o afín de costo por gap).
User: kevinah95
smith-waterman,Fast Smith-Waterman algorithm for Ruby
User: kojix2
smith-waterman,Javascript implementation of the Smith-Waterman algorithm for sequence alignment.
User: lorenzocestaro
smith-waterman,Collection of sequence alignment algorithms.
User: lorenzocestaro
smith-waterman,Examples for SDAccel 2017.1+ on AWS F1 instances
User: lorenzoditucci
smith-waterman,A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.org/abs/2003.00110.
Organization: mangul-lab-usc
smith-waterman,SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
User: martinsos
smith-waterman,Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences
User: masyagin1998
smith-waterman,A simple parallel implementation of Smith Waterman sequence alignment algorithm.
User: memaskal
smith-waterman,Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
User: mgfzemor
smith-waterman,🚀 R interface for SSW, a fast implementation of the Smith-Waterman algorithm using SIMD
User: nanxstats
Home Page: https://nanx.me/ssw-r/
smith-waterman,This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment
User: odoluca
smith-waterman,GPU-based DNA sequence alignment program using Smith-Waterman
User: pgngp
Home Page: https://sourceforge.net/projects/swiftseqaligner/
smith-waterman,Comparison of Protein Sequence Embeddings to Classify Molecular Functions
User: philippvaeth
smith-waterman,Tool for exploring sequence alignment algorithms
User: robertaboukhalil
Home Page: https://alignment.sandbox.bio
smith-waterman,Needleman-Wunsch and Smith-Waterman algorithms in python
User: scastlara
smith-waterman,Implementing the Smith-Waterman algorithm in Python
User: seb943
smith-waterman,A collection of string comparisons algorithms
User: sumn2u
Home Page: https://sumn2u.github.io/string-comparisons/
smith-waterman,Showcase of parallelization technologies using sequence alignment algorithms
User: t-neumann
smith-waterman,🔬🧬 Algoritmo de alinhamento Smith Waterman em Python
User: vic37get
smith-waterman,Bilkent University CS 481 Bioinformatics Algorithms assignments
User: ybalcanci
smith-waterman,Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
User: zenodeapp
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