Topic: needleman-wunsch Goto Github
Some thing interesting about needleman-wunsch
Some thing interesting about needleman-wunsch
needleman-wunsch,Use the Needleman-Wunsch algorithm to align two sequences: s1 and s2. Assume that a match = +2, mismatch = -2, gap = -2
User: abdullahmujahidali
needleman-wunsch,The implementation of the Needlemann-Wunsch Algorithem
User: adkoprek
needleman-wunsch,Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
User: althonos
Home Page: https://pyopal.readthedocs.io
needleman-wunsch,Less-wrong single-file Numba-accelerated Python implementation of Gotoh affine gap penalty extensions for the Needleman–Wunsch, Smith-Waterman, and Levenshtein algorithms for sequence alignment
User: ashvardanian
Home Page: https://github.com/ashvardanian/stringzilla
needleman-wunsch, This code is meant for educational purposes only! Sequence alignment in Python 3.x using Needleman–Wunsch algorithm. Reference code from TyMA (2017 - University of Málaga)
User: benhid
needleman-wunsch,This is the implementation of 3rd Part in 3-Part Series of Algorithms Illuminated Book. All Implementations in this repository are written in both Python and Golang. Single IPython Notebook contains all Algorithms given in this Part 3.
User: bharath3794
needleman-wunsch,Tools related to mispronunciation diagnosis detection (MDD) systems.
User: brono25
needleman-wunsch,Lots of protein
User: carlosgeos
needleman-wunsch,The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
Organization: cmu-safari
needleman-wunsch,SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
Organization: cmu-safari
needleman-wunsch,McGill University - Computational Biology Methods and Research Project
User: d-dawg78
needleman-wunsch,Biosequence analysis library
User: danielfamiyeh
needleman-wunsch,Interactive Visualization of Needleman-Wunsch Algorithm in Javascript
User: drdrsh
needleman-wunsch,DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.
User: dulandias
needleman-wunsch,Global and Local Sequence Alignment
User: enescigdem
needleman-wunsch,
User: filletofish
needleman-wunsch,An implementation of the Needleman-Wunsch algorithm for finding the best global alignment of two nucleotides.
User: francislawlor
needleman-wunsch,star alignment method implementation for multiple DNA sequences alignment
User: hanaecarrie
needleman-wunsch,Implement parallel Smith Waterman algorithm on CUDA
User: howeng98
needleman-wunsch,This is Mispronunciation detection and diagnosis Score Metric
User: huutuongtu
needleman-wunsch,Dynamic Programming in Erlang.
User: joergen7
needleman-wunsch,React searchbox with needleman-js algorithm
User: juanpablocruz
needleman-wunsch,Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
Organization: kensho-technologies
needleman-wunsch,El presente trabajo muestra la aplicación de algoritmos de alineación de secuencias conocidos como needleman-wunsch (global), smith-waterman (local) y semi-global con sus variantes (kband o afín de costo por gap).
User: kevinah95
needleman-wunsch,Collection of sequence alignment algorithms.
User: lorenzocestaro
needleman-wunsch,Este es un simple buscador que permite encontrar palabras clave similares a una palabra buscada. Para realizar esto, verifica los caracteres que coinciden entre ambas utilizando el algoritmo Needleman-Wunsch.
User: lozaeric
needleman-wunsch,Generate an accurate, timestamped transcript given an audio file and its text using Google Cloud's Speech-to-Text API via gRPC.
User: lukereichold
needleman-wunsch,Bio informatics course materials for NEUB students.
User: mamutalib
Home Page: https://mamutalib.github.io/Bio-informatics/
needleman-wunsch,A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.org/abs/2003.00110.
Organization: mangul-lab-usc
needleman-wunsch,PJE A Plagiat - Master 1 Informatique - 2016-2017 - Université de Lille
User: marcbal
Home Page: http://ci.pandacube.fr/job/PJEA-Plagiat_dev/
needleman-wunsch,Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences
User: masyagin1998
needleman-wunsch,C++ homework code and final project
User: melanietosik
needleman-wunsch,Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.
User: mmtechslv
needleman-wunsch,C# implementation of Needleman-Wunsch global sequence alignment algorithm.
User: mstfymrtc
needleman-wunsch,Short implementation (~500 lines) of the Gotoh algorithm, a.k.a. Needleman-Wunsch with affine gap penalties.
User: oboes
needleman-wunsch,This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment
User: odoluca
needleman-wunsch,
User: pawan300
needleman-wunsch,pairwise sequence alignment in scala
User: pityka
needleman-wunsch,Simple Needleman Wunsch Algorithm in C
User: psnappz
needleman-wunsch,Sequence alignment algorithms
User: psykhi
needleman-wunsch,Tool for exploring sequence alignment algorithms
User: robertaboukhalil
Home Page: https://alignment.sandbox.bio
needleman-wunsch,Needleman-Wunsch and Smith-Waterman algorithms in python
User: scastlara
needleman-wunsch,web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.
User: sirinefoudili
needleman-wunsch,Sequence Alignment (Needleman–Wunsch Algorithm using Dynamic Programming) for aligning sequences (words, sentences, DNA etc.)
User: sleekpanther
needleman-wunsch,Showcase of parallelization technologies using sequence alignment algorithms
User: t-neumann
needleman-wunsch,Bilkent University CS 481 Bioinformatics Algorithms assignments
User: ybalcanci
needleman-wunsch,Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
User: zenodeapp
needleman-wunsch,:microscope: :checkered_flag: Comparison of DNA Sequences
User: zumrudu-anka
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