Topic: variant-calling Goto Github
Some thing interesting about variant-calling
Some thing interesting about variant-calling
variant-calling,Imputation-beagle-tutorial
User: adrianodemarino
variant-calling,Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
User: aquaskyline
variant-calling,Use an ensemble of variant callers to call variants from ATAC-seq data
User: aryarm
variant-calling,A tool set for short variant discovery in genetic sequence data.
User: atks
Home Page: http://genome.sph.umich.edu/wiki/vt
variant-calling,A method for variant graph genotyping based on exact alignment of k-mers
Organization: bioinformatics-centre
variant-calling,find large indels (in the blind spot between GATK/freebayes and SV callers)
User: brentp
variant-calling,Long read production pipelines
Organization: broadinstitute
Home Page: https://broadinstitute.github.io/long-read-pipelines/
variant-calling,Viral genomics analysis pipelines
Organization: broadinstitute
variant-calling,Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
Organization: clinical-genomics
Home Page: https://balsamic.readthedocs.io/
variant-calling,GATK RNA-Seq Variant Calling in Nextflow
Organization: crg-cnag
variant-calling,A tool for fast and accurate summarizing of variant calling format (VCF) files
Organization: czbiohub-sf
variant-calling,Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/indigo/
variant-calling,Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/
variant-calling,Variant Calling Pipeline Using GATK4 and Nextflow
Organization: gencorefacility
variant-calling,High performance data storage for importing, querying and transforming variants.
Organization: genomicsdb
Home Page: https://genomicsdb.readthedocs.io
variant-calling,Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
Organization: hku-bal
variant-calling,Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Organization: hku-bal
variant-calling,ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Organization: hku-bal
variant-calling,xHLA: Fast and accurate HLA typing from short read sequence data
Organization: humanlongevity
variant-calling,Graph realignment tools for structural variants
Organization: illumina
variant-calling,Genome inference from a population reference graph
Organization: iqbal-lab-org
variant-calling,Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
User: karel-brinda
Home Page: https://arxiv.org/abs/1712.01146
variant-calling,Toolkit for calling structural variants using short or long reads
User: kcleal
variant-calling,Population-wide Deletion Calling
Organization: kehrlab
variant-calling,Reference-free variant discovery in large eukaryotic genomes
Organization: kevlar-dev
Home Page: https://kevlar.readthedocs.io
variant-calling,PEPPER-Margin-DeepVariant
User: kishwarshafin
variant-calling,De novo assembly based variant calling pipeline for Illumina short reads
User: lh3
variant-calling,Simple pileup-based variant caller
User: lh3
variant-calling,Bayesian haplotype-based mutation calling
Organization: luntergroup
variant-calling,De novo genome assembly and multisample variant calling
Organization: mcveanlab
Home Page: https://github.com/mcveanlab/mccortex/wiki
variant-calling,A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
Organization: moiexpositoalonsolab
Home Page: http://grene-net.org
variant-calling, Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
Organization: nanoporetech
variant-calling,Call and score variants from WGS/WES of rare disease patients.
Organization: nf-core
Home Page: https://nf-co.re/raredisease
variant-calling,Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Organization: nf-core
Home Page: https://nf-co.re/sarek
variant-calling,Assembly and intrahost/low-frequency variant calling for viral samples
Organization: nf-core
Home Page: https://nf-co.re/viralrecon
variant-calling,Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
Organization: nvidia
variant-calling,GATK4 Best Practice Nextflow Pipeline
User: oliversi
variant-calling,CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
Organization: pacificbiosciences
variant-calling,A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. ä¸ä¸ĒįŽæä¸å ¨éĸį WGS/WES åææĩį¨įæå¨.
User: shujiahuang
variant-calling,GitHub for the SIB courses NGS - Genome variant analysis
Organization: sib-swiss
Home Page: https://sib-swiss.github.io/NGS-variants-training/
variant-calling,Fast and accurate gene fusion detection from RNA-Seq data
User: suhrig
variant-calling,Python library to facilitate genome assembly, annotation, and comparative genomics
User: tanghaibao
variant-calling,Efficient variant-call data storage and retrieval library using the TileDB storage library.
Organization: tiledb-inc
Home Page: https://tiledb-inc.github.io/TileDB-VCF/
variant-calling,vcfdist: Accurately benchmarking phased variant calls
User: timd1
variant-calling,:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
User: tseemann
variant-calling,:scissors: :zap: Rapid haploid variant calling and core genome alignment
User: tseemann
variant-calling, C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Organization: vcflib
Home Page: https://github.com/vcflib/vcflib#vcflib
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