Topic: wavefront-alignment Goto Github
Some thing interesting about wavefront-alignment
Some thing interesting about wavefront-alignment
wavefront-alignment,Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
Organization: cmu-safari
wavefront-alignment,The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
Organization: cmu-safari
wavefront-alignment,SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
Organization: cmu-safari
wavefront-alignment,Optimal sequence-to-graph alignment with recombinations using wavefront algorithm.
User: ifoxz17
Home Page: https://github.com/AlgoLab/RecGraph
wavefront-alignment,Python wrapper for wavefront alignment using WFA2-lib
User: kcleal
wavefront-alignment,pairwise sequence alignment in scala
User: pityka
wavefront-alignment,AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
User: safaad
Home Page: https://doi.org/10.1093/bioinformatics/btad155
wavefront-alignment,Orthogonal polynomials for optics analysis
User: twang006
wavefront-alignment,Rust WFA and WFλ
User: urbanslug
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