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atomic_queue

C++ lockless queue.

bbhash

Bloom-filter based minimal perfect hash function library

boost-subset

Subset of Boost for vg dependencies

complete-striped-smith-waterman-library

cpp_progress_bar

C++ function that implements a progress bar in console applications

dind

Docker in Docker

dozeu

SIMD-parallel BLAST X-drop DP on sequence graphs

dynamic

Dynamic succinct/compressed data structures

fastahack

utilities for indexing and sequence extraction from FASTA files

fermi-lite

Standalone C library for assembling Illumina short reads in small regions

getblunted

For bluntifying overlapped GFAs

gfa-spec

Graphical Fragment Assembly (GFA) Format Specification

gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

giraffe-sv-paper

graph-genomics-review

Pangenome graphs (review article on graph-based pangenomic methods)

gssw

efficient alignment of strings to partially ordered string graphs

handle_paper

handlegraph-paper

the handle graph API implementation comparison paper

haplotype-aware-mapping-paper

Scripts for the haplotype-aware mapping paper project

htslib

C library for high-throughput sequencing data formats

ips4o

In-place Parallel Super Scalar Samplesort (IPS⁴o)

libbdsg

Optimized sequence graph implementations for graph genomics

libbdsg-easy

Easy installation for libbdsg

libbdsg_example

Example C++ project using libbdsg

libhandlegraph

Library for the Handle Graph abstraction

libsnarls

Library for working with variable sites in handle graphs

libvgio

A dynamic library that provides io for the vg toolkit.

long-read-giraffe-experiments

Experimental materials for testing the long-read mapping abilities of vg giraffe

pinchsonlib

raptor

Redland Raptor RDF syntax library