Haibao Tang's Projects
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
My collection of light bioinformatics analysis pipelines for specific tasks
Javascript code to highlight features in biological sequences
bashrc, vimrc, gitconfig and various other configuration files
Python library to handle Gene Ontology (GO) terms
Python library to facilitate genome assembly, annotation, and comparative genomics
Collection of third-party softwares used in jcvi library
Classify chimeric reads based on unique kmer contents
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
Animation projects that leverage the excellent nannou library
Dynamic contents within the plant genome duplication database
Internal scripts to run the pipeline to determine the transpositions of A. thaliana genes with respect to multiple outgroups
A bridge from C++ to Python logging
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Rust binding for WFA2-lib
Identify split reads in given chromosomal regions
Find nodes in hierarchical clustering that are statistically significant
Utility programs to trim or sort Illumina reads with adapter sequences