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moshi's Projects

aniclustermap icon aniclustermap

A tool for drawing ANI clustermap between all-vs-all microbial genomes

biopython icon biopython

Official git repository for Biopython (originally converted from CVS)

cafeplotter icon cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

cogclassifier icon cogclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

d3blocks icon d3blocks

The Python library to create stand-alone and interactive d3 charts.

fastdtlmapper icon fastdtlmapper

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

gbkviz icon gbkviz

Easy-to-use web application for visualization and comparison of genomes in Genbank file

mgcplotter icon mgcplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos

mummer2circos icon mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

patchworklib icon patchworklib

Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

phytreeviz icon phytreeviz

Simple phylogenetic tree visualization python package for phylogenetic analysis

pybarrnap icon pybarrnap

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

pycirclize icon pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

pygenomeviz icon pygenomeviz

A genome visualization python package for comparative genomics

pymsaviz icon pymsaviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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