brentp Goto Github PK
Name: Brent Pedersen
Type: User
Bio: Doing genomics from the Netherlands
Twitter: brent_p
Location: Utrecht, The Netherlands
Name: Brent Pedersen
Type: User
Bio: Doing genomics from the Netherlands
Twitter: brent_p
Location: Utrecht, The Netherlands
A Practical (And Opinionated) Guide To Analyzing 450K Data
4bit fasta format.
streaming, flexible agglomerative clustering
Amazon Web Services Operator Interface
numpy + GDAL == agoodle
sequence alignment. global, local, glocal.
Whole Exome/Whole Genome Sequencing alignment pipeline
A fast, ergonomic and portable tensor library in Nim with a deep learning focus for CPU, GPU and embedded devices via OpenMP, Cuda and OpenCL backends
DO NOT USE inject variants (snps/indels) from a vcf into a bam efficiently.
Best-practice pipelines for fully automated high throughput sequencing analysis
bcf parsing in golang
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
A columnar data container that can be compressed.
an API for intersections of genomic data
A powerful toolset for genome arithmetic.
A Python interface to the BEDTools API using Cython
A powerful toolset for genome arithmetic.
a pileup library that embraces the huge
bigwig in go via libbigWig
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
BWK awk modified for biological data
biogo is a bioinformatics library for Go
tabix file access with golang using biogo machinery
nim language wrapper for the blosc2 compression libray.
Resampling residuals of a linear model to determine significance with bootstrap-like sub-sampling
run bowtie then bfast on colorspace reads.
basepair bio: a single binary with many useful genomics subtools.
Automatically exported from code.google.com/p/bpbio
Automatically exported from code.google.com/p/bpgeo
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.