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Brent Pedersen's Projects

aclust icon aclust

streaming, flexible agglomerative clustering

aegea icon aegea

Amazon Web Services Operator Interface

align icon align

sequence alignment. global, local, glocal.

arraymancer icon arraymancer

A fast, ergonomic and portable tensor library in Nim with a deep learning focus for CPU, GPU and embedded devices via OpenMP, Cuda and OpenCL backends

bamject icon bamject

DO NOT USE inject variants (snps/indels) from a vcf into a bam efficiently.

bcbio-nextgen icon bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bcf icon bcf

bcf parsing in golang

bcftools icon bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bcolz icon bcolz

A columnar data container that can be compressed.

bedtools icon bedtools

A powerful toolset for genome arithmetic.

bigly icon bigly

a pileup library that embraces the huge

bigwig-nim icon bigwig-nim

command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig

bio-playground icon bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

bioawk icon bioawk

BWK awk modified for biological data

biogo icon biogo

biogo is a bioinformatics library for Go

bix icon bix

tabix file access with golang using biogo machinery

blosc2-nim icon blosc2-nim

nim language wrapper for the blosc2 compression libray.

bootstrip icon bootstrip

Resampling residuals of a linear model to determine significance with bootstrap-like sub-sampling

bowfast icon bowfast

run bowtie then bfast on colorspace reads.

bpbio icon bpbio

basepair bio: a single binary with many useful genomics subtools.

bpbio-old icon bpbio-old

Automatically exported from code.google.com/p/bpbio

bpgeo icon bpgeo

Automatically exported from code.google.com/p/bpgeo

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