Topic: chromatin-accessibiity Goto Github
Some thing interesting about chromatin-accessibiity
Some thing interesting about chromatin-accessibiity
chromatin-accessibiity,Tool to analyze chromatin accessibility with long read sequencing technologies
User: bsaintjo
chromatin-accessibiity,scRNA-seq and scATAC-seq utilities
User: darkadin
chromatin-accessibiity,PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
User: durenzn
chromatin-accessibiity,An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Organization: huising-lab
chromatin-accessibiity,Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
User: jawa23bio
chromatin-accessibiity,scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
User: jeongdo801
chromatin-accessibiity,CLI tool for processing single locus SMF data
User: jkmckenna
chromatin-accessibiity,Rapid diagnostic strategy for cardiomyopathy etiology
User: jlduan
Home Page: https://jlduan.github.io/cardiomyopathy-etiology/
chromatin-accessibiity,Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)
Organization: krebslabrep
chromatin-accessibiity,Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
Organization: kundajelab
chromatin-accessibiity,Instructions on how to perform chromatin accessibility data pre-processing and analyses (focusing on bulk ATAC-seq)
Organization: lupienlab
chromatin-accessibiity,ATAC-seq peak-calling and QC analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/atacseq
chromatin-accessibiity,Robust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling
User: nolan-h-hamilton
Home Page: https://nolan-h-hamilton.github.io/ROCCO/
chromatin-accessibiity,A python package for chromVAR
Organization: pinellolab
Home Page: https://pychromvar.readthedocs.io/
chromatin-accessibiity,Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
User: sebastian-gregoricchio
chromatin-accessibiity,A comprehensive source for Stathopoulos lab code generated and used in data analysis.
Organization: stathopouloslab
chromatin-accessibiity,PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Organization: suwonglab
chromatin-accessibiity,A crash course in scATAC-seq data processing
User: tacazares
chromatin-accessibiity,A robust statistical test for TF footprint data analyses
Organization: ucarlab
chromatin-accessibiity,A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
User: wbaopaul
chromatin-accessibiity,Big data Regression for predicting DNase I hypersensitivity
User: weiqiangzhou
chromatin-accessibiity,Enhanced zmw_selector.py + New run_zmw_selector.sh
User: wendyycm
chromatin-accessibiity,A two-step model that combines neural network and ensemble learning to predict OCR–mediated interactions.
User: yin-shen
chromatin-accessibiity,A de novo prediction tool of chromatin accessible regions for plant genomes
User: yin-shen
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.