caleblareau Goto Github PK

7076

Analysis of mtDNA variants that are synonymous, specifically m7076A>G

9dec_immgen

Slides, figures, etc. for CAL's Presentation at ImmGen meeting on December 9, 2016

asap_reproducibility

Reproducing all analyses and figures for the ASAP-seq paper

asap_to_kite

CL python script to reformat CITEATAC fastqs for kite (kallisto | bustools) processing

backgroundshiny

Run a command (e.g. python script) in the background; check for output; enable reactive options

bap

Bead-based single-cell atac processing

barcode-multiplets

Code and processed data to reproduce the barcode multiplet 10x paper

bedtools2

A powerful toolset for genome arithmetic.

bio234finalproject

Final collaborative project for BIO234

bits

Useful bits of software / code snippets

broscience

idk macros and stuff yanno

bst235

Final project for BST235

bst235_presentation

Final project slides

bst245_final

Repo for final project for BST245

bst245final

bst290-advcompbio

Data Repository for CAL's work for Advanced Computational Biology, Fall 2016

buencolors

R package of colors for the Buenrostro Lab

caleblareau

Hello World!

caleblareau.github.io

Caleb Lareau personal website

chromvarxx

Additional functions added to chromVAR

cisbp-rnamotifs

CL creation of RNA binding motif database

covid_bcr_stephenson

CL analysis of processed BCR data from - https://www.nature.com/articles/s41591-021-01329-2

crispr-abe-rna-data

CL generation of ABE RNA-seq data

crispr-be-rna-editing

Model / analysis repository for learning sequence features of RNA editing by base editors

crispr-be-rnaediting-data-long

CL make longer data

crispr-cbe-rna-data

Repository for CBE RNA editing data

cshl-ast2019-scatac

Material for Advanced Sequencing Technologies pratical on scATAC-seq

document-mtdna-del

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easylift

R package for easy mm9 <-> mm10 / hg19 <-> hg38

ebvgenome

CL repo for NC_007605.1