Name: Gautier RICHARD
Type: User
Company: ANSES Swine Immunology Virology Unit
Bio: Phylogenetics, Phylodynamics, Epigenomics, Hi-C, and transcriptomics data integration and tools development
Location: Ploufragan, France
Blog: https://fanlink.tv/gautier_richard
Gautier RICHARD's Projects
BEAST Tools - various scripts to help with BEAST Phylodynamic Analyses
Conda recipes for the bioconda channel.
deepStats: a stastitical toolbox for deeptools and genomic signals
Tools to process and analyze deep sequencing data.
Simple web browser to visualize HiC tracks
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
A set of scripts and bioinformatic tools to process, handle and analyse Influenza viruses sequences
Snakemake-based pipeline to align multiple genomes and find large inversions.
Meta-pipeline to identify transposable element insertions using next generation sequencing data
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
Nextstrain Instance for the PIGIE European Swine Influenza A Virus Surveillance Compilation from 2012 to 2022
Customizable workflows based on snakemake and python for the analysis of NGS data
STIRRER Project Code Repository
H1av swIAV Evolution from 2019 to 2022
Tool Shed repositories maintained by the Intergalactic Utilities Commission
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
UVIP pipelines and scripts