Topic: wgbs Goto Github
Some thing interesting about wgbs
Some thing interesting about wgbs
wgbs,A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
User: ben-laufer
Home Page: https://ben-laufer.github.io/CpG_Me/
wgbs,A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
User: ben-laufer
Home Page: https://www.benlaufer.com/DMRichR/
wgbs,An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
User: ben-laufer
wgbs,Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".
User: ben-laufer
wgbs,TFregulomeR reveals transcription factors’ context-specific features and functions
User: benoukraflab
wgbs,Analysis of DNA methylation data by whole-genome bisulfite sequencing in umbilical cord blood from ASD and TD subjects in the MARBLES and EARLI studies
User: cemordaunt
wgbs,An R package for weighted region comethylation network analysis
User: cemordaunt
Home Page: https://cemordaunt.github.io/comethyl/
wgbs,A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
User: cemordaunt
wgbs,Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
User: cemordaunt
wgbs,Analysis of DNA methylation and gene expression for thioredoxin system genes in Wilson disease
User: cemordaunt
wgbs,Using Snakemake to implement ENCODE WGBS pipeline
User: christacaggiano
wgbs,Documentation for methrix R package
Organization: compepigen
Home Page: https://compepigen.github.io/methrix_docs/index.html
wgbs,mix of python, bash and R functions, scripts and notebooks to benchmark the use of methylation as proxy to infer TF binding
User: dcolinmorgan
wgbs,The DKFZ alignment workflow plugin originally developed at the eilslabs
Organization: dkfz-odcf
Home Page: https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki
wgbs,ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
Organization: encode-dcc
wgbs,Differential methylation: Easy, Fast, Identification and ANnoTation
User: hhg7
wgbs,Analysis pipelines for genomic sequencing data
User: igordot
Home Page: https://igordot.github.io/sns
wgbs,AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
User: itsvenu
Home Page: https://bioconductor.org/packages/ALPS
wgbs,A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
Organization: jlab-code
wgbs,Our typical analysis steps for WGBS data, starting from FASTQ reads and ending with the construction of bsseq objects. Created using nextflow
Organization: lieberinstitute
Home Page: http://research.libd.org/BiocMAP/
wgbs,TFregulomeR reveals transcription factors’ context-specific features and functions
User: linquynus
wgbs,R package to impute methylation within WGBS using machine learning
User: lulizou
wgbs,Pipeline for BS-Seq data based on snakemake
User: seb-mueller
wgbs,A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
User: stephaniehicks
wgbs,Cluster-based analysis of CpG methylation
Organization: waterlandlab
Home Page: https://clubcpg.readthedocs.io/
wgbs,This repository contains data and functions related to computational epigenomics data analysis.
User: yoannpa
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