Topic: bioinformatics-algorithms Goto Github

👇 Here are 84 public repositories matching this topic...

aaszodi / multovl
bioinformatics-algorithms,Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.
User: aaszodi
genomic-regions bioinformatics-algorithms

adebc / motif-finding-algorithms
bioinformatics-algorithms,Implementation of three algorithms to solve the motif finding problem.
User: adebc
sequence-motif bioinformatics-algorithms

amamory / seriation
bioinformatics-algorithms,An efficient implementation of the Seriation problem which 'finds a suitable linear order for a set of objects'. It has been used to order a network of proteins such that 'related' nodes are closer in the other.
User: amamory
Home Page: https://api.semanticscholar.org/CorpusID:19693670
seriation protein-interaction bioinformatics-algorithms

amsesk / scgid
bioinformatics-algorithms,SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
User: amsesk
bioinformatics-pipeline bioinformatics-algorithms bioinformatics-tool bioinformatics fungi eukaryotes single-cell-genomics genome-assembly-evaluation python3

baranzinilab / kg_rag
bioinformatics-algorithms,Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks
Organization: baranzinilab
gpt knowledge-graph large-language-models llama2 llm rag retrieval-augmented-generation biomedical-applications biomedical-informatics bioinformatics

behdadmansouri / bioiinformatics-semi-global-alignment
bioinformatics-algorithms,Local, Semi-Global and Global Alignment for Protein Sequences
User: behdadmansouri
bioinformatics bioinformatics-algorithms

bioinformatics-specialization / bioinformatics-1
bioinformatics-algorithms,Finding Hidden Messages in DNA
Organization: bioinformatics-specialization
Home Page: https://www.coursera.org/learn/dna-analysis?specialization=bioinformatics
bioinformatics bioinformatics-algorithms algorithms pythonprogramming

bioinformatics-specialization / bioinformatics-2
bioinformatics-algorithms,Genome Sequencing
Organization: bioinformatics-specialization
Home Page: https://www.coursera.org/learn/genome-sequencing?specialization=bioinformatics
bioinformatics bioinformatics-algorithms algorithms pythonprogramming

bystrogenomics / bystro
bioinformatics-algorithms,Bystro genetic analysis (annotation, filtering, statistics)
Organization: bystrogenomics
bioinformatics bioinformatics-algorithms bioinformatics-analysis bioinformatics-databases bioinformatics-pipeline bioinformatics-scripts genomics genomics-search

cb11711211 / sc_st_attention_integration
bioinformatics-algorithms,The model and algorithm about how to implement the integration of single-cell RNA-seq and spatial transcriptomics through attention mechanism
User: cb11711211
bioinformatics-algorithms deep-learning spatial-transcriptomics

celineuygun / bioinformatics
bioinformatics-algorithms,INF103 Dönem Sonu Projesi
User: celineuygun
bioinformatics bioinformatics-algorithms levenshtein-distance edit-distance-algorithm rabin-karp-algorithm string-matching

cnapy-org / optlang_enumerator
bioinformatics-algorithms,
Organization: cnapy-org
python constraint-based-modeling bioinformatics-algorithms computational-biology stoichiometric-modeling metabolic-engineering

csfoo / contrafold-se
bioinformatics-algorithms,CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
User: csfoo
rna-structure-prediction rna-structure conditional-random-fields machine-learning bioinformatics-algorithms

datomicsgroup / deepbio
bioinformatics-algorithms,This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.
Organization: datomicsgroup
deep-learning deep-learning-papers genomics biomedicine bioinformatics papers tutorials bioinformatics-algorithms biology machine-learning

dynverse / dynbenchmark
bioinformatics-algorithms,Comparison of methods for trajectory inference on single-cell data 🥇
Organization: dynverse
Home Page: https://doi.org/10.1101/276907
trajectory-inference benchmarking bioinformatics-algorithms

dynverse / dynmethods
bioinformatics-algorithms,A collection of 50+ trajectory inference methods within a common interface 📥📤
Organization: dynverse
Home Page: https://dynverse.org
single-cell-rna-seq single-cell-analysis bioinformatics-algorithms trajectory-inference-methods trajectory-inference pseudotemporal-ordering

fatemehgholamzadeh / bwt-on-gene-sequence
bioinformatics-algorithms,implementation of Burrows–Wheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019
User: fatemehgholamzadeh
bioinformatics bioinformatics-analysis bioinformatics-algorithms bioinformatics-data bwt bwt-transform python python3 machine-learning machine-learning-algorithms

fatmakahveci / rosalind-solutions
bioinformatics-algorithms,My solutions for rosalind problems
User: fatmakahveci
bioinformatics bioinformatics-tool data algorithms algorithms-and-data-structures bioinformatics-algorithms dynamic-programming binarysearch tree tree-structure

gartner-lab / demultiplex2
bioinformatics-algorithms,deMULTIplex2: robust sample demultiplexing for scRNA-seq
Organization: gartner-lab
bioinformatics-algorithms cell-hashing demultiplexing multi-seq scrna-seq statistical-models

gauravcodepro / pacbio-nanopore-repeat-coverage
bioinformatics-algorithms,pacbio or oxford nanopore long reads repeat coverage estimation.
User: gauravcodepro
bioinformatics bioinformatics-algorithms bioinformatics-tool longread oxford-nanopore pacbio pacbio-sequencing sequencing-coverage sequencing-data sequencing-error

google / fast-simple-lcsk
bioinformatics-algorithms,Fast and simple algorithms for computing both LCSk and LCSk+
Organization: google
Home Page: https://arxiv.org/abs/1705.07279
lcsk algorithm lcs string strings bioinformatics bioinformatics-algorithms dynamic-programming lcskpp lcskp

gregoryschwartz / too-many-cells
bioinformatics-algorithms,Cluster single cells and analyze cell clade relationships with colorful visualizations.
User: gregoryschwartz
Home Page: https://gregoryschwartz.github.io/too-many-cells/
single-cell visualization single-cell-analysis single-cell-rna-seq bioinformatics-pipeline bioinformatics-algorithms

grgrbu / algorithms-in-bioinformatics
bioinformatics-algorithms,Here you can find popular algorithms in Bioinformatics, which I wrote for homework in Bioinformatics Institute (bioinf.me)
User: grgrbu
bioinformatics bioinformatics-algorithms

imgag / clincnv
bioinformatics-algorithms,Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
Organization: imgag
bioinformatics-tool bioinformatics-algorithms copy-number-variation

jakubmifek / mff-docs
bioinformatics-algorithms,Documents I found relevant during my studies at the faculty of Mathematics and Physics of Charles University
User: jakubmifek
mff cuni cz studies courses documents constraint-programming artificial-intelligence bioinformatics-algorithms machine-learning

jaswindersingh2 / spot-rna-1d
bioinformatics-algorithms,RNA Backbone Torsion and Pseudotorsion Angle Prediction using Dilated Convolutional Neural Networks
User: jaswindersingh2
Home Page: https://sparks-lab.org/server/spot-rna-1d/
rna-torsion-angles rna-pseudotorsion-angles machine-learning convolutional-neural-networks spot-rna-1d rna-backbone-torsion angle-distributions deep-neural-networks deep-learning bioinformatics-algorithms

kalyaniasthana / comparinggenesproteinsandgenomes_bioinformaticsiii
bioinformatics-algorithms,coding problems from course 3 of the bioinformatics specializaton
User: kalyaniasthana
Home Page: https://www.coursera.org/learn/comparing-genomes?specialization=bioinformatics
dynamic-programming sequence-alignment genome-rearrangment bioinformatics-algorithms bioinformatics

kalyaniasthana / findingmutationsindnaandproteins_bioinformaticsvi
bioinformatics-algorithms,coding problems from course 6 of the Bioinformatics specialization
User: kalyaniasthana
Home Page: https://www.coursera.org/learn/dna-mutations
bioinformatics bioinformatics-algorithms trie trie-tree trie-structure trie-coloring burrows-wheeler-transform read-mapping hmm hmm-viterbi-algorithm

kangjunseo / bioinformatics
bioinformatics-algorithms,This repository is for collect python codes and jupyter notebooks when I used to solve bioinformatics problems.
User: kangjunseo
rosalind rosalind-bioinformatics-challenge bioinformatics bioinformatics-algorithms python

luciamartinf / assignmentanswers
bioinformatics-algorithms,Solutions to the assignments proposed in the Bioinformatics Programming Challenges course from the Master in Computational Biology at Universidad Politécnica de Madrid.
User: luciamartinf
ruby bioinformatics-algorithms

luciamartinf / lmf_proy.py
bioinformatics-algorithms,Program to search and analyse proteins in a series of prokaryotic genomes
User: luciamartinf
bioinformatics-algorithms biopython python

mamutalib / bio-informatics
bioinformatics-algorithms,Bio informatics course materials for NEUB students.
User: mamutalib
Home Page: https://mamutalib.github.io/Bio-informatics/
edit-distance-algorithm needleman-wunsch-algorithm neub smith-waterman-algorithm dna-transcription pdp partial-digest-problem bio-informatics bioinformatics bioinformatics-algorithms

mationai / seq-genomics
bioinformatics-algorithms,Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang
User: mationai
seq seq-lang bioinformatics-algorithms genome-sequencing

mattravenhall / bio
bioinformatics-algorithms,General bioinformatics functions in Python
User: mattravenhall
bioinformatics bioinformatics-algorithms genomics

maxsalick / sgft
bioinformatics-algorithms,Scanning gradient Fourier transform method for striated image quantification
User: maxsalick
image-processing bioinformatics-algorithms matlab pattern-recognition

mikeroyal / bioinformatics-guide
bioinformatics-algorithms,Bioinformatics Guide
User: mikeroyal
bioinformatics bioinformatics-pipeline data-science bioconductor bioinformatics-algorithms bioinformatics-analysis bioinformatics-tool biology python awesome

mmanoj / wildfox
bioinformatics-algorithms,Adaptive QoS and DPI platform based on mathematical models & Bioinformatics Algorithms
User: mmanoj
dpi qos mathematical-models bioinformatics-algorithms bioinformatics dpi-platform

muellan / metacache
bioinformatics-algorithms,memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
User: muellan
genome read-mapping refseq taxonomy metagenomics metagenomic-analysis metagenomic-classification metagenomes metagenomic-data ncbi-refseq

nictru / algobio
bioinformatics-algorithms,This project aims on making the algorithms covered in the corresponding lecture at LMU Munich easier to understand by providing step-by-step logging and result visualization.
User: nictru
bioinformatics bioinformatics-algorithms

njpipeorgan / l1000-bayesian
bioinformatics-algorithms,L1000 peak deconvolution based on Bayesian analysis
User: njpipeorgan
lincs l1000 bioinformatics-algorithms bioinformatics-databases

platonb / bioinformatic-python-scripts
bioinformatics-algorithms,Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.
User: platonb
bioinformatics bioinformatics-pipeline bioinformatics-scripts bioinformatics-algorithms bioinformatic-tools python3 opensource vigg

psiphitheta / bioinformatics-labs
bioinformatics-algorithms, Genome analysis scripts and laboratory files for the UofT Bioinformatics course
User: psiphitheta
Home Page: http://steipe.biochemistry.utoronto.ca/abc/index.php/Bioinformatics_Main_Page
bioinformatics-algorithms bioinformatics-analysis bioinformatics-scripts

rcedgar / usearch12
bioinformatics-algorithms,Open-source usearch
User: rcedgar
Home Page: https://drive5.com/usearch
bioinformatics bioinformatics-algorithms bioinformatics-tool computational-biology

renatawong / bioinformatics-algorithms
bioinformatics-algorithms,Python implementation of bioinformatics algorithms and useful functions.
User: renatawong
bioinformatics bioinformatics-scripts bioinformatics-algorithms

rfechtner / pypairs
bioinformatics-algorithms,PyPairs - A python scRNA-Seq classifier
User: rfechtner
Home Page: https://pypairs.rtfd.io
bioinformatics bioinformatics-algorithms single-cell-analysis scrna-seq-analysis

scialdonelab / ciara_python
bioinformatics-algorithms,Implementation of entropy of mixing algorithm in python
Organization: scialdonelab
bioinformatics bioinformatics-algorithms bioinformatics-analysis bioinformatics-tool celltype-annotation rna-seq rna-seq-analysis feature-selection opensource

thejacksonlaboratory / jax-cnv
bioinformatics-algorithms,Official code repository for JAX-CNV
Organization: thejacksonlaboratory
cnv bioinformatics-algorithms ngs genomic

titansarus / bioinformatics-algorithms
bioinformatics-algorithms,Answer to "Bioinformatics Algorithms" Book Coding Problems
User: titansarus
bioinformatics bioinformatics-algorithms rosalind-solutions

xjtu-omics / stminer
bioinformatics-algorithms,Build the relationship between SVGs
Organization: xjtu-omics
bioinformatics-algorithms spatial-transcriptomics

yupenghe / reptile
bioinformatics-algorithms,Predicting regulatory DNA elements based on epigenomic signatures
User: yupenghe
enhancer-prediction bioinformatics bioinformatics-algorithms epigenomics dna-methylation