Topic: cell-segmentation Goto Github
Some thing interesting about cell-segmentation
Some thing interesting about cell-segmentation
cell-segmentation,HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation (WACV 2023)
User: amirhossein-kz
cell-segmentation,Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (However, I think the title should be "3DCellSeg - a robust deep learning-based 3D cell instance segmentation pipeline".)
User: antonotnawang
cell-segmentation,A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
User: ariel-waisman
cell-segmentation,Spatiotemporal modeling of spatial transcriptomics
Organization: aristoteleo
Home Page: https://spateo-release.readthedocs.io/
cell-segmentation,This workshop outlines a machine-learning cell segmentation architecture from scratch for the life-sciences vertical, using Amazon SageMaker, S3, Lambda and SageMaker Inference endpoints
Organization: aws-samples
Home Page: https://catalog.us-east-1.prod.workshops.aws/workshops/7fb985db-2c2c-4f72-8aa6-7a1c8202b61a
cell-segmentation,Iterative H-minima Based Marker-Controlled Watershed for Cell Nucleus Segmentation
User: canfkoyuncu
cell-segmentation,A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
User: cellimnet
cell-segmentation,Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
User: christophreich1996
Home Page: https://arxiv.org/pdf/2011.09763
cell-segmentation,Official and maintained implementation of the dataset paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC 2023].
User: christophreich1996
Home Page: https://christophreich1996.github.io/yeast_in_microstructures_dataset/
cell-segmentation,SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Organization: ciccalab
Home Page: https://github.com/ciccalab/SIMPLI/wiki
cell-segmentation,Segment Anything for Microscopy
Organization: computational-cell-analytics
Home Page: https://computational-cell-analytics.github.io/micro-sam/
cell-segmentation,Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.
User: danuserlab
Home Page: https://www.biorxiv.org/content/10.1101/2024.05.03.592249v2
cell-segmentation,Real-time, interactive exploration of 3D image stacks
User: delunapaolo
cell-segmentation,Quantifying 2D cell shape and epithelial tissue dynamics
Organization: epitools
Home Page: https://pypi.org/project/epitools
cell-segmentation,This program is implemented to count the number of cells in the image. The cells are also labeled and the perimeter and area are calculated for each cell.
User: farkoo
cell-segmentation,Instance Segmentation with PyTorch & PyTorch Lightning.
Organization: fzj-inm1-bda
Home Page: https://docs.celldetection.org
cell-segmentation,Deep learning-based instance segmentation tool for roundish objects in 2D and 2D+t data
Organization: hip-satomi
cell-segmentation,Automated identification of cell boundaries from the pathological video data
Organization: iitmcvg
cell-segmentation,A small GUI application for counting cells in microscope images
User: jendelel
cell-segmentation,imageC / EVAnalyzer2 - High throughput biological image processor
User: joda01
Home Page: https://imagec.org
cell-segmentation,Tissue Cancer Segmentation project using multiple segmentation networks
User: kdha0727
cell-segmentation,(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
User: lee-gihun
cell-segmentation,The code implementation for cell segmentation
User: lewislou
cell-segmentation,ClusterMap for multi-scale clustering analysis of spatial gene expression
Organization: liulab-bioelectronics-harvard
cell-segmentation,Evaluation of label free cell and nuclei segmentation
User: lstrgar
cell-segmentation,PyTorch implementation of several neural network models for cellular image segmentation
User: marshuang80
cell-segmentation,Train torchvision's MaskRCNN model using the ConvNeXt architecture as the backbone network.
User: mberkay0
cell-segmentation,[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
User: mkang315
cell-segmentation,HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
User: mmasoud1
Home Page: https://mmasoud1.github.io/HistoJS/
cell-segmentation,a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Organization: mouseland
Home Page: https://www.cellpose.org/
cell-segmentation,Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Organization: nadeemlab
Home Page: https://deepliif.org
cell-segmentation,Interactive deep learning whole-cell segmentation and thresholding using partial annotations
Organization: nadeemlab
cell-segmentation,Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
Organization: oist
cell-segmentation,Encoder-Decoder Cell and Nuclei segmentation models
User: okunator
Home Page: https://github.com/okunator/cellseg_models.pytorch
cell-segmentation,A Hybrid CNN-Transformer Architecture for Precise Medical Image Segmentation
User: omid-nejati
cell-segmentation,QuPath - Bioimage analysis & digital pathology
Organization: qupath
Home Page: https://qupath.github.io
cell-segmentation,Cell Segmenter using Machine Learning
User: rickyota
cell-segmentation,Child repository of Deep-learning-with-PyTorch-and-GCP
User: rnr-2018
cell-segmentation,Cell tracking and segmentation software
Organization: royerlab
Home Page: https://royerlab.github.io/ultrack
cell-segmentation,(Biological) Cell Proposal Network for Microscopy Image Analysis
User: saadullahakram
cell-segmentation,For cell segmentation and tracking.
User: sail-guolab
cell-segmentation,A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
User: simonguld
cell-segmentation,StarDist - Object Detection with Star-convex Shapes
Organization: stardist
cell-segmentation,StarDist plugin for napari
Organization: stardist
cell-segmentation,Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Organization: tissueimageanalytics
Home Page: https://warwick.ac.uk/tia
cell-segmentation,A python script which is used for segmenting cells from provided phase contrast images. This is a university project.
User: umutsahinse
cell-segmentation,ClusterMap for multi-scale clustering analysis of spatial gene expression
Organization: wanglab-broad
cell-segmentation,Training cell segmentation models using deep learning
User: wdlcameron
cell-segmentation,Napari-based 3D cell segmentation software using machine learning predictions as inputs, especially for EM image stacks of brains
User: wenchentao
cell-segmentation,数据可视化, 数据挖掘, 数据处理 ETL分析
User: yaoguangluo
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