theislab Goto Github PK
Name: Theis Lab
Type: Organization
Bio: Institute of Computational Biology
Location: Munich
Name: Theis Lab
Type: Organization
Bio: Institute of Computational Biology
Location: Munich
Andrea Ocone’s GRN inference framework
Reproducibility repo accompanying Angelidis et al. "An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics"
Reproducibility repo accompanying Strunz et al. "Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis". Nat Commun. 2020.
Reproducibility repo accompanying Thomas M Conlon, Mathias Heikenwälder et al. and Ali Yildirim "Inhibition of LTβR-signalling blocks epithelial apoptosis and activates Wnt-induced regeneration in lung"
Reproducibility repo accompanying Chaido Ori, Meshal Ansari, Ilias Angelidis, Fabian J. Theis, Herbert B. Schiller and Micha Drukker "Single cell trajectory mapping of human pluripotent stem cells differentiating towards lung and hepatocyte progenitors".
This repo contains the analysis code describing the findings of Mayr_et_al
Convert between AnnData and SingleCellExperiment
Code for benchmarking the effect of feature selection on scRNA-seq atlas construction and use
A Python adaption of Augur to prioritize cell types in perturbation analysis.
Software required for Bart-Seq technology – a cheap technology to analyze (single) cells using forward and reverse barcoding for target genes
Demultiplexing pipeline for BART-Seq
Fit generalized linear models in python.
Assembling of biomolecule binding data (TF/RNA) from genomics databases for ML-downstream.
Conditional Autoencoders for Multiplexed Pixel Analysis
Analysis of 4i data from CAMPA manuscript
CellRank: dynamics from multi-view single-cell data
CellRank 2's reproducibility repository.
Tutorials and examples for CellRank.
CellRank's reproducibility repository.
Code to reproduce results from the CellRank preprint
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.