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academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

agb_naive_bayes

Project of AGB class: Naive Bayes model to classify tumor types gene expression patterns

article_downloader

Script that downloads articles/abstracts from PubMed using a list of PMIDs

bio

Perl modules to do things with sequences.

blast_scripts

Scripts to process blast output files.

brh_coverage

Simple R script to make coverage plots.

cachetory

Caching library with support for multiple cache backends

cayman

Cayman is a Jekyll theme for GitHub Pages

cgl

Generic modules for the Computational Genomics Lab

color

Scripts to manipulate colors

cv

cv made with dev resume

django-sql-explorer

Easily share data across your company via SQL queries. From Grove Collab.

django_dramatiq

A Django app that integrates with Dramatiq.

dotfiles

My config files

expression_to_graph

Scripts to map expression information onto an svg graph

gene_finder

Gene tagger that uses a dictionary from HGNC

ggdisplot

Scatter plot with two density plots.

go-tutorial

Go scripts to learn the language

graphcompare

Command-line application to compare graph (DOT/graphviz and TBL) files.

graphs-degree

Perl module that sorts the nodes of a graph by degree.

hash

Modules to do different things with Perl hashes

ieo-kidney-expression-analysis

learning_rust

Scripts to learn Rust

master_upf

microworld

the game that will change it all

minineedle

Needleman-Wunsch and Smith-Waterman algorithms in python

miniseq

Tiny python package to handle sequences and FASTAs

mirror_tree

nanoplot

Plotting scripts for long read sequencing data

netcutter

Disentangle protein-protein interaction networks using a list of genes as drivers.