brentp / bigly Goto Github PK

Hi,
I am using mpileup for supporting reads from forward or reverse strand, but it is very slow. If bigly can track it as well, I would like to give it a try.

Thanks!
Tommy

• coordinate y-axes across samples

• add per-sample spinner.

• cancel previous request when new one is made

• make legend click work on all plots (currently just top plot)

• add "weird orientation line"

• bigly: split weird count into +/+, -/-, -/+

• don't show soft clips < 4.

• add simple repeats + micro satellites track

• make IGV bounds match those from the plot exactly.

• report insert size as number of std-devs above/below the mean calculated by sampling the bam.

• change bigly to accept a bam.Reader

Hi,

nice, I like the plotting function very much.

Any chance the plotting function could take an argument to save an image directly to disk instead of requiring x11 ?

Then it would be a nice way to script lots of images without manual work for example, and supply them to users.

Thanks,
Colin