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Emmanouil "Manolis" Maragkakis's Projects

biogo icon biogo

biogo is a bioinformatics library for Go

bioutils icon bioutils

Standalone utility scripts for bioinformatics

collapsebed icon collapsebed

Collapse a BED file. Identical entries are collapsed into a single entry.

fasta icon fasta

Convenient handling of FASTA-encoded files for the Go language

fastautils icon fastautils

Standalone utility scripts for manipulating FASTA files

fastq-trim icon fastq-trim

Trim Fastq read sequences from the 5' or 3' end

fastqutils icon fastqutils

Standalone utility scripts for manipulating FASTQ files

genoo icon genoo

A Modern Perl Framework for High Throughput Sequencing analysis

genoox-study icon genoox-study

An Object Oriented library for managing deep sequencing studies

go-arg icon go-arg

Struct-based argument parsing in Go

goenv icon goenv

You know, rbenv but for go.

htsdb icon htsdb

Libary and tools to handle High Throughput Sequencing data stored in SQLite

itutils icon itutils

Standalone utility scripts for common IT tasks

jobgraph icon jobgraph

JobGraph can be used to create pipelines of jobs that need to run on a machine

lendistro icon lendistro

Length distribution for records in common bioinformatics files

m6anet icon m6anet

Detection of m6A from direct RNA-Seq data

monitor-git-reps icon monitor-git-reps

Simple BASH script to check if git repositories have any uncommitted changes.

perl-mybio icon perl-mybio

Perl library primarily for analyzing deep sequencing data

rnadna icon rnadna

Convert sequence representation RNA - DNA for FASTA/Q

samql icon samql

[LEGACY: Development has moved to maragkakislab/samql] SQL-like query language for the SAM/BAM file format

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