arq5x Goto Github PK

arq5x.github.io

ascii_plots

Convenience function for quick and dirty data analysis

aws-cli

Universal Command Line Interface for Amazon Web Services

bamtools

API and toolkit for reading, writing, and manipulating BAM (genome alignment) files

bash_completion

bedtools

A powerful toolset for genome arithmetic.

bedtools-galaxy

bedtools-protocols

bedtools-python

A Python interface to the BEDTools API using Cython

bedtools-v2.18-alpha

Preliminary repository for what will be the v2.18 release.

bedtools2

bedtools - the swiss army knife for genome arithmetic

bigly

a pileup library that embraces the huge

bioawk

BWK awk modified for biological data

bits

BITS: Binary Interval Search

bits_paper

bujo

cabage-manuscript2

chrom_sweep

Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

codachrom

Chromosomal copy number tools.

covid-19-data

An ongoing repository of data on coronavirus cases and deaths in the U.S.

covviz

calculate and view coverage based variation

cruzdb

python access to UCSC genomes database

cyvcf

A fast Python library for VCF files leveraging Cython for speed.

cyvcf2

cython + htslib == fast VCF and BCF processing

d4-format

The D4 Quantatative Data Format

filo

Useful FILe and stream Operations

foreign

Modified or extracted from other programs

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

gemini

a lightweight db framework for exploring genetic variation.