cjfields Goto Github PK
Name: Chris Fields
Type: User
Company: @HPCBio @h3abionet @OBF @IGBIllinois @bioperl
Twitter: cjfields
Location: University of Illinois UC
Blog: hpcbio.illinois.edu
Chris Fields's Projects
activeresource
The Perl implementation of ActiveResource
amphora2
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
assemblage
Tools for working with second gen assemblies, fasta sequences, etc
bamtools
API and toolkit for reading, writing, and manipulating BAM (genome alignment) files
bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
bcbio.variation
Toolkit to analyze genomic variation data, built on the GATK with Clojure
bedtools
A flexible suite of utilities for genome arithmetic. That is, set theory on genomic features.
bio-gff3
fast, low-level GFF3 manipulation in Perl
bio-hts
Source for the CPAN Bio::DB::HTS module. Perl adaptors into the HTSlib library.
bio-kseq
Perl XS bindings to klib's kseq.h
bio-pacbio
General BioPerl modules for PacBio-related tools (EXPERIMENTAL)
bio-parse
Low level biological data parsers
bio-root-mop
Moose-based Bio::Root bridge classes (testing for BioPerl)
bio-stream
Generic streams for BioPerl parsing
bio-tools-primer3redux
A reimplementation of BioPerl's Primer3-related code for primer3 v1 and v2
bio.brew
A tiny package manager for crucial unix and bioinformatics tools
bioinformatics
Tools for bioinformatics
biolib
BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages
biome
An experimental Moose-based BioPerl implementation
bioperl-collection
submodule test for bioperl repos
bioperl6
reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
bold
Interface to the Bold Systems barcode webservice
bosc-review-of-reviews
This repository contains scripts for collating abstract reviews from EasyChair
bosc_materials
Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/
bp6-bug
Lexical loading bug?
common-workflow-language
Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.
datasciencecoursera
Temp repo for Data Science Toolbox course
datasharing
The Leek group guide to data sharing
dist-zilla-pluginbundle-cjfields
My Dist::Zilla plugin bundle (or bungle, depending on how you look at it)
fastq-tools
Small utilities for working with fastq sequence files.
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