Topic: snakemake-workflow Goto Github
Some thing interesting about snakemake-workflow
Some thing interesting about snakemake-workflow
snakemake-workflow, Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Organization: 4dn-dcic
snakemake-workflow,A Snakemake pipeline for variant calling of genomic FASTQ data using GATK
User: allytrope
snakemake-workflow,Repository to process ITS amplicon sequencing data and produce figures for Schneider et al (2021)
User: andnischneider
Home Page: https://msystems.asm.org/content/6/1/e00884-20
snakemake-workflow,Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈
User: angrymaciek
Home Page: https://github.com/AngryMaciek/warlock
snakemake-workflow,A pipeline for TotalRNA analysis
Organization: au-envs-bioinformatics
Home Page: https://github.com/AU-ENVS-Bioinformatics/TotalRNA-Snakemake/wiki
snakemake-workflow,HBVouroboros automates sequencing-based HBV genotyping and expression profiling
Organization: bedapub
snakemake-workflow,A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.
Organization: centrefornetzero
Home Page: https://pypsa-fes.readthedocs.io/en/latest/index.html
snakemake-workflow,A lightweight Snakemake-based workflow that implements the DP-GEN scheme.
User: chazeon
snakemake-workflow,
User: deepalivasoya
snakemake-workflow,:snake::hamburger: A beginner's guide to modular snakemake workflows.
User: dohlee
snakemake-workflow,Variant Calling Snakemake Pipeline
User: elbecerrasoto
snakemake-workflow,A Snakemake workflow for analyzing AMBER molecular dynamics simulations.
User: emleddin
snakemake-workflow,A Snakemake workflow to run and benchmark structure learning (a.k.a. causal discovery) algorithms for probabilistic graphical models.
User: felixleopoldo
Home Page: https://benchpressdocs.readthedocs.io
snakemake-workflow,Simple template for running snakemake with R
User: fritzbayer
snakemake-workflow,Long RNA-seq analysis workflow
Organization: guigolab
snakemake-workflow,Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
Organization: gustaveroussy
snakemake-workflow,discover-virome: identify and quantify viruses from metagenomic assemblies
Organization: hivlab
snakemake-workflow,Snakemake workflow to upload Sars-Cov-2 reads to ENA
Organization: hivlab
snakemake-workflow,SARS-CoV-2 sequencing workflow
Organization: hivlab
snakemake-workflow,Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow
Organization: insilicoconsulting
snakemake-workflow,NGS pipeline for influenza virus libraries
Organization: iri-uw-bioinformatics
snakemake-workflow,a small exercise using Angrist & Krueger's 1991 data in a reproducible workflow
User: lachlandeer
snakemake-workflow,reproducible research project template for R using Renv and snakemake with an econ application
User: lachlandeer
Home Page: https://lachlandeer.github.io/snakemake-econ-r-tutorial/
snakemake-workflow,Workflow for identifying and classifying homologous gene/protein sequences
User: laelbarlow
snakemake-workflow,Snakemake pipeline for simulating shotgun metagenomic samples
Organization: metagenlab
Home Page: https://metagenlab.github.io/MeSS/
snakemake-workflow,Python pipeline for analyzing INSeq Insertion Sequencing data
Organization: mjmlab
snakemake-workflow,Snakemake workflow for CRISPR-Cas9 screen analysis
User: niekwit
snakemake-workflow,Snakemake workflow for Cut & Run
User: niekwit
snakemake-workflow,Snakemake workflow for DamID-Seq analysis
User: niekwit
snakemake-workflow,Snakemake workflow for RNA-Seq differential transcript analysis using Salmon/Deseq2
User: niekwit
snakemake-workflow,Snakemake workflow for transposable element RNA-Seq using TEtranscripts
User: niekwit
snakemake-workflow,Repo to analyze population genetic data with many different methods
Organization: novembrelab
snakemake-workflow,a Snakemake version of distiller - the Open2C Hi-C mapping workflow
Organization: open2c
snakemake-workflow,hla-typing by optitype & polysolver , detect loh by lohhla.
User: pyc1216
snakemake-workflow,SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Organization: rivm-bioinformatics
Home Page: https://rivm-bioinformatics.github.io/SARS2seq/
snakemake-workflow,ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
Organization: rivm-bioinformatics
Home Page: https://rivm-bioinformatics.github.io/ViroConstrictor/
snakemake-workflow,Config files for my GitHub profile.
User: s-shemmee
snakemake-workflow,Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
User: sanjaynagi
Home Page: https://sanjaynagi.github.io/rna-seq-pop/
snakemake-workflow,The pipeline to process Novaseq dataset, from fastq to nge.
Organization: seqscope
Home Page: https://seqscope.github.io/NovaScope/
snakemake-workflow,Lightweight bioinformatics pipeline for microbial genome recovery
User: serka-m
snakemake-workflow,This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis
User: svsuresh
snakemake-workflow,Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
User: tdayris
snakemake-workflow,Personal data redaction on images based on FHIR patient resources.
User: thomasbtf
snakemake-workflow,snakemake workflow for basecalling and demultiplexing of ONT sequencing data
User: vibaotram
snakemake-workflow,snakemake long read assembly pipeline
Organization: weigelworld
snakemake-workflow,Snakemake-based computational workflow for neoantigen prediction from diverse sources
Organization: ylab-hi
snakemake-workflow,Method to detect 3'UTR changes from scRNA-seq
Organization: zavolanlab
snakemake-workflow,Snakemake workflows for TAM depletion analysis and de novo IS605 annotation
Organization: zhanglab-ioz
Home Page: http://zhanglab.ioz.ac.cn/
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